Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RDV90_RS04715 Genome accession   NZ_CP133578
Coordinates   1005544..1006602 (+) Length   352 a.a.
NCBI ID   WP_309176262.1    Uniprot ID   -
Organism   Enterobacter roggenkampii strain FACU     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1000544..1011602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV90_RS04690 mltB 1001017..1002117 (+) 1101 WP_008499552.1 lytic murein transglycosylase B -
  RDV90_RS04695 - 1002418..1003071 (+) 654 WP_055321958.1 metal ABC transporter ATP-binding protein -
  RDV90_RS04700 - 1003068..1003928 (+) 861 WP_021241951.1 metal ABC transporter permease -
  RDV90_RS04705 - 1003943..1004827 (+) 885 WP_021241952.1 metal ABC transporter substrate-binding protein -
  RDV90_RS04710 pncC 1004957..1005454 (+) 498 WP_008499547.1 nicotinamide-nucleotide amidase -
  RDV90_RS04715 recA 1005544..1006602 (+) 1059 WP_309176262.1 recombinase RecA Machinery gene
  RDV90_RS04720 recX 1006671..1007171 (+) 501 WP_021241953.1 recombination regulator RecX -
  RDV90_RS04725 alaS 1007303..1009930 (+) 2628 WP_309176263.1 alanine--tRNA ligase -
  RDV90_RS04730 csrA 1010172..1010357 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37924.39 Da        Isoelectric Point: 4.8134

>NTDB_id=875033 RDV90_RS04715 WP_309176262.1 1005544..1006602(+) (recA) [Enterobacter roggenkampii strain FACU]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPVAAKEI
EKKVRELLLNNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=875033 RDV90_RS04715 WP_309176262.1 1005544..1006602(+) (recA) [Enterobacter roggenkampii strain FACU]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGATGTGGAAACGATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGCG
CGGGCGGCCTGCCAATGGGCCGTATCGTAGAGATCTACGGGCCAGAATCCTCCGGTAAAACTACCCTGACGCTGCAGGTG
ATTGCTGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTCATCGATGCCGAACACGCGCTGGATCCTGTTTATGCGCGTAA
GCTGGGCGTGGACATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTTGACTCCGTTGCCGCACTGACGCCAAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACAACCGGTGGTA
ACGCCCTGAAATTCTACGCGTCTGTCCGTCTGGATATCCGCCGTATCGGTGCGGTGAAAGAGGGTGAAAACGTCGTCGGT
AGCGAAACCCGCGTGAAGGTGGTGAAGAACAAAATCGCTGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGTGA
AGGGATCAACTTCTACGGTGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGTTGCGGCGAAAGAGATT
GAGAAGAAGGTGCGCGAGCTTCTGCTGAACAACCAGGACTCCAAACCTGATTTCGTAGTCGATGCTGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.196

94.034

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.196

94.034

0.801
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

70.774

99.148

0.702
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

69.075

98.295

0.679
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.424

95.739

0.588
  recA Helicobacter pylori 26695

61.128

95.739

0.585
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557