Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   WHL52_RS15215 Genome accession   NZ_CP149576
Coordinates   2857062..2857757 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain DSM 10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2852062..2862757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS15190 minD 2852998..2853804 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  WHL52_RS15195 minC 2853806..2854486 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  WHL52_RS15200 mreD 2854539..2855057 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  WHL52_RS15205 mreC 2855054..2855926 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  WHL52_RS15210 mreB 2855957..2856970 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  WHL52_RS15215 ysxA/radC 2857062..2857757 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  WHL52_RS15220 maf 2857794..2858363 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  WHL52_RS15225 spoIIB 2858516..2859514 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  WHL52_RS15230 comC 2859648..2860394 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  WHL52_RS15235 folC 2860534..2861826 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=874993 WHL52_RS15215 WP_003246034.1 2857062..2857757(-) (ysxA/radC) [Bacillus subtilis strain DSM 10]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=874993 WHL52_RS15215 WP_003246034.1 2857062..2857757(-) (ysxA/radC) [Bacillus subtilis strain DSM 10]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424