Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RDV84_RS01915 Genome accession   NZ_CP133568
Coordinates   434661..435719 (-) Length   352 a.a.
NCBI ID   WP_057946404.1    Uniprot ID   A0A1H3RK90
Organism   Lysobacter yananisis strain SNNU513     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429661..440719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV84_RS01895 (RDV84_01895) pilQ 430483..432519 (-) 2037 WP_309152287.1 type IV pilus secretin PilQ -
  RDV84_RS01900 (RDV84_01900) - 432595..433146 (-) 552 WP_057946407.1 pilus assembly protein PilP -
  RDV84_RS01905 (RDV84_01905) pilO 433148..433831 (-) 684 WP_057946406.1 type 4a pilus biogenesis protein PilO -
  RDV84_RS01910 (RDV84_01910) - 433828..434661 (-) 834 WP_309152288.1 PilN domain-containing protein -
  RDV84_RS01915 (RDV84_01915) pilM 434661..435719 (-) 1059 WP_057946404.1 pilus assembly protein PilM Machinery gene
  RDV84_RS01920 (RDV84_01920) - 436341..438896 (+) 2556 WP_309152289.1 penicillin-binding protein 1A -
  RDV84_RS01925 (RDV84_01925) - 439340..439993 (+) 654 WP_309152290.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37713.05 Da        Isoelectric Point: 4.6373

>NTDB_id=874940 RDV84_RS01915 WP_057946404.1 434661..435719(-) (pilM) [Lysobacter yananisis strain SNNU513]
MGLITKSQPALVGVDISSTAVKLLQLSRAGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIKRAVARSGTRAKHAAAA
VAGSSVITRVIGMPADLDEDDLESQVELEAANYVPYPIDEVNHDFEVLGPMPGSPDMIQVLLAASRSENVEVRASALELG
GLTPRVMDVEAFAIENAFALLADTLSGPRDGLVALVDSGATMTTLNVLRNGRSLYHREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYQAEVLEPFKEAMVQQVSRLLQFFYAGSEFNRVDQIVLAGGGASIPRIAEMVEEQLGIPTTVANPLA
HMTLGPRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=874940 RDV84_RS01915 WP_057946404.1 434661..435719(-) (pilM) [Lysobacter yananisis strain SNNU513]
GTGGGACTCATCACAAAAAGCCAGCCGGCTCTCGTCGGCGTGGACATCAGTTCGACCGCGGTAAAGTTGCTGCAACTTTC
GCGTGCGGGCAATCGCTACCGCGTTGAGCATTACGCGGTCGAGCCGTTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAGGTCGAAGCGGTGGGCGAGGCGATCAAACGCGCCGTGGCCCGCTCGGGGACCCGCGCCAAGCACGCCGCCGCGGCG
GTCGCCGGTTCCTCGGTGATCACCCGCGTCATCGGCATGCCGGCCGACCTGGACGAGGACGATCTGGAGTCGCAGGTCGA
GCTGGAAGCGGCGAACTACGTGCCGTATCCGATCGATGAGGTCAACCACGATTTCGAAGTGCTCGGCCCGATGCCGGGCA
GCCCGGACATGATCCAGGTGCTGCTCGCCGCGTCGCGTTCGGAGAACGTGGAAGTGCGCGCCTCGGCGCTGGAGCTCGGC
GGCCTGACCCCGCGGGTCATGGACGTGGAAGCCTTCGCGATCGAGAACGCGTTCGCGCTGCTCGCCGACACCCTCAGCGG
GCCGCGCGACGGTCTGGTCGCCCTGGTCGACTCGGGCGCGACCATGACCACGCTCAACGTCCTGCGCAACGGCCGCAGCC
TCTATCACCGCGAGCAGGTGTTCGGCGGTAAGCAGCTGACCGACGAGGTCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGCTTGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACCAGGCCGAGGTGCTGGAGCCGTTCAAGGAAGCCATGGT
CCAGCAGGTCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAGTTCAACCGCGTCGACCAGATCGTCCTGGCCGGCG
GCGGCGCCTCGATCCCGCGCATCGCCGAGATGGTCGAAGAGCAGCTCGGCATCCCGACCACGGTGGCCAATCCGCTCGCG
CACATGACCCTGGGGCCGCGCGTGCAAGCGCACGCGCTGGCGCAGGACGCTCCCGCGCTGATGATCGCCTGCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3RK90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.284

100

0.503
  comM Acinetobacter nosocomialis M2

50

100

0.5
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

43.626

100

0.437