Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RE439_RS06945 Genome accession   NZ_CP133551
Coordinates   1391288..1391818 (-) Length   176 a.a.
NCBI ID   WP_077122644.1    Uniprot ID   A0A1R3U1L8
Organism   Agrobacterium rosae strain rho-6.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1386288..1396818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE439_RS06930 (RE439_06930) - 1389153..1389782 (+) 630 WP_077122642.1 MarC family protein -
  RE439_RS06935 (RE439_06935) - 1389846..1390994 (+) 1149 WP_416408746.1 HPP family protein -
  RE439_RS06940 (RE439_06940) - 1390999..1391256 (-) 258 WP_077100928.1 hypothetical protein -
  RE439_RS06945 (RE439_06945) ssb 1391288..1391818 (-) 531 WP_077122644.1 single-stranded DNA-binding protein Machinery gene
  RE439_RS06950 (RE439_06950) uvrA 1392108..1395029 (+) 2922 WP_416408747.1 excinuclease ABC subunit UvrA -
  RE439_RS06955 (RE439_06955) - 1395072..1395872 (+) 801 WP_416408748.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18677.48 Da        Isoelectric Point: 5.3320

>NTDB_id=874818 RE439_RS06945 WP_077122644.1 1391288..1391818(-) (ssb) [Agrobacterium rosae strain rho-6.1]
MAGSVNKVILLGNVGADPEIRRTQDGRPIANLRIATSESWRDRTSGERKEKTEWHSVVVFNEGLCKVIEQYVKKGAKLYI
EGALQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGGAGRGGDDFGGSSGGGDFGGGGGYDQKPARSAPARGGQ
SGGGNFSNDMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=874818 RE439_RS06945 WP_077122644.1 1391288..1391818(-) (ssb) [Agrobacterium rosae strain rho-6.1]
ATGGCTGGCAGCGTAAACAAGGTAATTTTGCTCGGGAACGTCGGCGCTGATCCGGAAATCCGCCGCACGCAAGACGGTCG
CCCTATCGCAAATCTTCGTATCGCGACCTCTGAGAGCTGGCGCGACCGCACCTCCGGTGAGCGGAAAGAAAAGACCGAAT
GGCACTCTGTCGTGGTCTTCAACGAAGGTCTTTGCAAGGTCATCGAGCAGTATGTGAAAAAGGGTGCCAAGCTCTATATC
GAAGGCGCGCTTCAGACCCGCAAATGGCAGGACCAGACCGGCAATGACCGTTATTCCACTGAAATCGTGCTGCAAGGCTT
CAACTCGACGCTGACTATGCTCGATGGTCGCGGTGAAGGCGGTGGCGGTGCTGGCCGTGGCGGAGATGATTTCGGTGGCT
CATCTGGCGGCGGCGATTTTGGCGGCGGCGGTGGTTACGATCAGAAGCCGGCTCGTTCTGCGCCCGCGCGCGGCGGCCAG
TCTGGCGGCGGCAACTTCTCCAACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3U1L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.221

100

0.5
  ssb Vibrio cholerae strain A1552

48.603

100

0.494
  ssb Neisseria gonorrhoeae MS11

36.264

100

0.375
  ssb Neisseria meningitidis MC58

36.264

100

0.375