Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q9312_RS14620 Genome accession   NZ_CP133548
Coordinates   3251784..3252851 (+) Length   355 a.a.
NCBI ID   WP_309201597.1    Uniprot ID   A0AA51X5R8
Organism   Pleionea litopenaei strain HL-JVS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3246784..3257851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9312_RS14610 (Q9312_14610) rpmE 3248738..3248953 (+) 216 WP_309201595.1 50S ribosomal protein L31 -
  Q9312_RS14615 (Q9312_14615) - 3249063..3251603 (-) 2541 WP_309201596.1 penicillin-binding protein 1A -
  Q9312_RS14620 (Q9312_14620) comM 3251784..3252851 (+) 1068 WP_309201597.1 pilus assembly protein PilM Machinery gene
  Q9312_RS14625 (Q9312_14625) - 3252851..3253429 (+) 579 WP_309201598.1 PilN domain-containing protein -
  Q9312_RS14630 (Q9312_14630) - 3253431..3254054 (+) 624 WP_309201599.1 type 4a pilus biogenesis protein PilO -
  Q9312_RS14635 (Q9312_14635) - 3254051..3254590 (+) 540 WP_309201600.1 pilus assembly protein PilP -
  Q9312_RS14640 (Q9312_14640) - 3254643..3256751 (+) 2109 WP_309201601.1 type IV pilus secretin PilQ -
  Q9312_RS14645 (Q9312_14645) aroK 3256855..3257379 (+) 525 WP_309201602.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38585.68 Da        Isoelectric Point: 4.1942

>NTDB_id=874814 Q9312_RS14620 WP_309201597.1 3251784..3252851(+) (comM) [Pleionea litopenaei strain HL-JVS1]
MLAQLFGTKRPSVVGLDISSTSVKLLELGRVGSRYRVEAYAVEPLPQEAVSERDIRDPEAVGEAIKRVMSRSKAGIKNAA
VAVAGSAVITKTIQLDKNLSDDDMENQIQVEADQYIPYPLEEVALDFEVIGESEKAPDKVDVLLAASRSENVYSRADAVE
LGGLEAKVVDVEAYAMERAFKLLENQLPDQGEGKIIAIVDVGATMTSLSVLEDFKTIYTREQVFGGAQLTEEIQRRYGLS
YEEAGMAKKQGGLPDDYEPEVLEPFKEAVIQQVSRSLQFFYGSSQYSEVDHVVLAGGCAVIDGLEEMLEERLGVSASIAN
PFADMSIANRVNAQALSVDAPSLMICCGLALRSFD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=874814 Q9312_RS14620 WP_309201597.1 3251784..3252851(+) (comM) [Pleionea litopenaei strain HL-JVS1]
ATGCTGGCTCAGCTATTTGGGACAAAACGGCCTTCAGTGGTTGGGTTGGATATCAGTTCAACCTCCGTGAAGCTATTAGA
ATTGGGGCGCGTCGGATCTCGCTATCGAGTCGAGGCGTATGCTGTAGAACCTTTACCACAAGAAGCGGTCTCCGAACGCG
ATATTCGCGATCCCGAAGCCGTCGGCGAAGCGATTAAGCGAGTAATGAGTCGCTCAAAAGCCGGAATCAAGAACGCAGCC
GTCGCAGTAGCGGGCTCTGCCGTGATTACCAAAACCATTCAACTGGACAAAAACTTGTCTGATGACGATATGGAGAATCA
GATACAGGTTGAAGCTGACCAGTACATTCCCTATCCGTTAGAAGAGGTTGCACTCGACTTCGAAGTCATTGGTGAGTCTG
AGAAGGCGCCGGACAAAGTCGATGTGTTACTCGCTGCGTCACGGTCAGAGAATGTCTACAGCCGAGCCGATGCGGTCGAA
CTGGGTGGACTCGAAGCGAAAGTGGTTGATGTCGAAGCTTACGCCATGGAGCGAGCATTCAAGTTGCTCGAAAATCAGCT
CCCTGACCAAGGCGAAGGAAAAATCATTGCCATTGTTGATGTTGGTGCCACCATGACCAGCTTGAGCGTTCTAGAAGATT
TTAAAACCATTTATACCCGCGAGCAGGTTTTCGGCGGCGCGCAGTTAACGGAAGAGATTCAACGTCGTTATGGGCTGTCA
TATGAAGAAGCGGGAATGGCGAAGAAACAAGGTGGGCTTCCAGATGATTATGAGCCGGAAGTACTAGAGCCCTTTAAAGA
AGCCGTTATTCAACAAGTAAGTCGTTCTTTACAGTTTTTCTACGGTTCGAGTCAGTACAGCGAAGTCGACCATGTCGTTT
TGGCAGGTGGATGCGCGGTCATCGATGGTTTAGAAGAAATGCTAGAGGAACGCTTGGGTGTTTCTGCTTCAATCGCGAAT
CCATTCGCAGATATGTCGATTGCTAATCGAGTGAATGCACAGGCTTTGAGTGTCGACGCGCCGTCCTTGATGATTTGCTG
CGGACTAGCATTGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(15-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

53.955

99.718

0.538
  pilM Acinetobacter baumannii D1279779

53.672

99.718

0.535
  comM Acinetobacter baylyi ADP1

51.695

99.718

0.515
  pilM Legionella pneumophila strain ERS1305867

46.61

99.718

0.465