Detailed information
Bioinformatically predicted
Overview
| Name | ideA | Type | Regulator |
| Locus tag | RDI66_RS04865 | Genome accession | NZ_CP133492 |
| Coordinates | 1052359..1053042 (-) | Length | 227 a.a. |
| NCBI ID | WP_156734072.1 | Uniprot ID | A0A6G6TED8 |
| Organism | Pasteurella multocida strain PM140 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 976995..1081555 | 1052359..1053042 | within | 0 |
Gene organization within MGE regions
Location: 976995..1081555
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RDI66_RS04600 (RDI66_04600) | - | 976995..979013 (+) | 2019 | WP_309042821.1 | ATP-binding protein | - |
| RDI66_RS04605 (RDI66_04605) | - | 979143..980384 (-) | 1242 | WP_001218618.1 | integrase family protein | - |
| RDI66_RS04610 (RDI66_04610) | - | 980386..980532 (-) | 147 | WP_001922873.1 | hypothetical protein | - |
| RDI66_RS04615 (RDI66_04615) | - | 980658..981632 (-) | 975 | WP_000497807.1 | ParM/StbA family protein | - |
| RDI66_RS04620 (RDI66_04620) | mobI | 982097..982540 (+) | 444 | WP_000348524.1 | conjugative transfer protein MobI(A/C) | - |
| RDI66_RS04625 (RDI66_04625) | umuC | 982551..983516 (-) | 966 | WP_223293465.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| RDI66_RS04630 (RDI66_04630) | - | 983946..985379 (-) | 1434 | WP_003152694.1 | multidrug efflux transporter outer membrane subunit TOprJ1 | - |
| RDI66_RS04635 (RDI66_04635) | - | 985384..988518 (-) | 3135 | WP_034065037.1 | multidrug efflux RND transporter permease subunit TMexD3 | - |
| RDI66_RS04640 (RDI66_04640) | tmexC | 988534..989697 (-) | 1164 | WP_065285147.1 | multidrug efflux RND transporter periplasmic adaptor subunit TMexC | - |
| RDI66_RS04645 (RDI66_04645) | - | 989877..990434 (+) | 558 | WP_003152690.1 | TetR/AcrR family transcriptional regulator | - |
| RDI66_RS04650 (RDI66_04650) | - | 990561..991931 (+) | 1371 | WP_065285146.1 | IS1182-like element ISCfr1 family transposase | - |
| RDI66_RS04655 (RDI66_04655) | - | 992481..995171 (+) | 2691 | WP_058131653.1 | AAA family ATPase | - |
| RDI66_RS04660 (RDI66_04660) | - | 995239..995703 (-) | 465 | WP_023443007.1 | hypothetical protein | - |
| RDI66_RS04665 (RDI66_04665) | - | 995684..997723 (-) | 2040 | WP_034039551.1 | hypothetical protein | - |
| RDI66_RS04670 (RDI66_04670) | - | 997720..999450 (-) | 1731 | WP_034039553.1 | site-specific integrase | - |
| RDI66_RS04675 (RDI66_04675) | - | 999443..1000732 (-) | 1290 | WP_034039555.1 | site-specific integrase | - |
| RDI66_RS04680 (RDI66_04680) | - | 1001308..1001901 (+) | 594 | WP_000107352.1 | Tn3 family transposase | - |
| RDI66_RS04685 (RDI66_04685) | - | 1002015..1003328 (+) | 1314 | Protein_898 | DUF4158 domain-containing protein | - |
| RDI66_RS04690 (RDI66_04690) | - | 1004007..1004240 (-) | 234 | Protein_899 | DNA polymerase V subunit UmuC | - |
| RDI66_RS04695 (RDI66_04695) | umuD | 1004248..1004697 (-) | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| RDI66_RS04700 (RDI66_04700) | - | 1004696..1004953 (+) | 258 | WP_000182836.1 | hypothetical protein | - |
| RDI66_RS04705 (RDI66_04705) | - | 1005336..1006241 (+) | 906 | WP_000196208.1 | 3'-5' exonuclease | - |
| RDI66_RS04710 (RDI66_04710) | - | 1006329..1006643 (+) | 315 | WP_000284113.1 | hypothetical protein | - |
| RDI66_RS04715 (RDI66_04715) | - | 1006712..1007638 (+) | 927 | WP_001883760.1 | WYL domain-containing protein | - |
| RDI66_RS04720 (RDI66_04720) | - | 1007648..1008247 (+) | 600 | WP_156734109.1 | DUF1819 family protein | - |
| RDI66_RS04725 (RDI66_04725) | - | 1008244..1008828 (+) | 585 | WP_000645939.1 | DUF1788 domain-containing protein | - |
| RDI66_RS04730 (RDI66_04730) | brxC | 1008847..1012524 (+) | 3678 | WP_156734107.1 | BREX system P-loop protein BrxC | - |
| RDI66_RS04735 (RDI66_04735) | - | 1012541..1014304 (+) | 1764 | WP_010129446.1 | DUF262 domain-containing protein | - |
| RDI66_RS04740 (RDI66_04740) | pglX | 1014320..1018021 (+) | 3702 | WP_011117362.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| RDI66_RS04745 (RDI66_04745) | pglZ | 1018021..1020678 (+) | 2658 | WP_156734105.1 | BREX-1 system phosphatase PglZ type A | - |
| RDI66_RS04750 (RDI66_04750) | brxL | 1020695..1022770 (+) | 2076 | WP_156734103.1 | protease Lon-related BREX system protein BrxL | - |
| RDI66_RS04755 (RDI66_04755) | - | 1022921..1027225 (+) | 4305 | WP_156734101.1 | NACHT domain-containing NTPase | - |
| RDI66_RS04760 (RDI66_04760) | mobH | 1027368..1029518 (+) | 2151 | WP_156734099.1 | MobH family relaxase | - |
| RDI66_RS04765 (RDI66_04765) | traD | 1029567..1031387 (+) | 1821 | WP_309042822.1 | conjugative transfer system coupling protein TraD | - |
| RDI66_RS04770 (RDI66_04770) | - | 1031397..1031957 (+) | 561 | WP_170355933.1 | conjugative transfer protein | - |
| RDI66_RS04775 (RDI66_04775) | - | 1031944..1032579 (+) | 636 | WP_170355931.1 | DUF4400 domain-containing protein | - |
| RDI66_RS04780 (RDI66_04780) | - | 1032606..1033193 (-) | 588 | WP_087504523.1 | plasmid-related protein | - |
| RDI66_RS04785 (RDI66_04785) | traL | 1033481..1033762 (+) | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| RDI66_RS04790 (RDI66_04790) | - | 1033759..1034385 (+) | 627 | WP_000667170.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| RDI66_RS04795 (RDI66_04795) | - | 1034366..1035265 (+) | 900 | WP_373463497.1 | type-F conjugative transfer system secretin TraK | - |
| RDI66_RS04800 (RDI66_04800) | - | 1035268..1036557 (+) | 1290 | WP_170383165.1 | TraB/VirB10 family protein | - |
| RDI66_RS04805 (RDI66_04805) | traV | 1036632..1037204 (+) | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| RDI66_RS04810 (RDI66_04810) | traA | 1037201..1037587 (+) | 387 | WP_000180225.1 | TraA family conjugative transfer protein | - |
| RDI66_RS04815 (RDI66_04815) | - | 1037807..1038583 (+) | 777 | WP_170355935.1 | type IV toxin-antitoxin system AbiEi family antitoxin | - |
| RDI66_RS04820 (RDI66_04820) | - | 1038591..1039529 (+) | 939 | WP_170355928.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| RDI66_RS04825 (RDI66_04825) | - | 1039661..1040353 (+) | 693 | WP_001228924.1 | DsbC family protein | - |
| RDI66_RS04830 (RDI66_04830) | traC | 1040353..1042752 (+) | 2400 | WP_170355926.1 | type IV secretion system protein TraC | - |
| RDI66_RS04835 (RDI66_04835) | - | 1042745..1043092 (+) | 348 | WP_156734078.1 | plasmid-related protein | - |
| RDI66_RS04840 (RDI66_04840) | - | 1043076..1043588 (+) | 513 | WP_170355924.1 | S26 family signal peptidase | - |
| RDI66_RS04845 (RDI66_04845) | - | 1043596..1044723 (+) | 1128 | WP_238795189.1 | TrbC family F-type conjugative pilus assembly protein | - |
| RDI66_RS04850 (RDI66_04850) | - | 1044707..1045735 (+) | 1029 | WP_156734076.1 | TraU family protein | - |
| RDI66_RS04855 (RDI66_04855) | traN | 1045738..1049430 (+) | 3693 | WP_170355921.1 | conjugal transfer protein TraN | - |
| RDI66_RS04860 (RDI66_04860) | - | 1049521..1052124 (-) | 2604 | WP_205884524.1 | AAA family ATPase | - |
| RDI66_RS04865 (RDI66_04865) | ideA | 1052359..1053042 (-) | 684 | WP_156734072.1 | endonuclease | Regulator |
| RDI66_RS04870 (RDI66_04870) | - | 1053151..1053753 (-) | 603 | WP_309042823.1 | hypothetical protein | - |
| RDI66_RS04875 (RDI66_04875) | - | 1054121..1054447 (+) | 327 | WP_156734069.1 | plasmid-related protein | - |
| RDI66_RS04880 (RDI66_04880) | - | 1054463..1054882 (+) | 420 | WP_012368368.1 | single-stranded DNA-binding protein | - |
| RDI66_RS04885 (RDI66_04885) | bet | 1054962..1055780 (+) | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| RDI66_RS04890 (RDI66_04890) | - | 1055864..1056007 (+) | 144 | WP_170355919.1 | hypothetical protein | - |
| RDI66_RS04895 (RDI66_04895) | - | 1056068..1057084 (+) | 1017 | WP_170355917.1 | YqaJ viral recombinase family protein | - |
| RDI66_RS04900 (RDI66_04900) | - | 1057294..1058253 (+) | 960 | WP_001959209.1 | AAA family ATPase | - |
| RDI66_RS04905 (RDI66_04905) | - | 1058253..1059020 (+) | 768 | WP_170355915.1 | hypothetical protein | - |
| RDI66_RS04910 (RDI66_04910) | - | 1059119..1060072 (+) | 954 | WP_170355913.1 | DUF3150 domain-containing protein | - |
| RDI66_RS04915 (RDI66_04915) | - | 1060134..1060574 (+) | 441 | WP_170355911.1 | hypothetical protein | - |
| RDI66_RS04920 (RDI66_04920) | - | 1060644..1062299 (+) | 1656 | WP_170355909.1 | VWA domain-containing protein | - |
| RDI66_RS04925 (RDI66_04925) | radC | 1062383..1062880 (+) | 498 | WP_025610838.1 | DNA repair protein RadC | - |
| RDI66_RS04930 (RDI66_04930) | - | 1062880..1063221 (+) | 342 | WP_025610839.1 | hypothetical protein | - |
| RDI66_RS04935 (RDI66_04935) | - | 1063313..1064386 (+) | 1074 | WP_170355907.1 | primase-helicase zinc-binding domain-containing protein | - |
| RDI66_RS04940 (RDI66_04940) | - | 1064476..1065183 (+) | 708 | WP_170355905.1 | hypothetical protein | - |
| RDI66_RS04945 (RDI66_04945) | - | 1065318..1071047 (+) | 5730 | WP_265028167.1 | ATP-binding protein | - |
| RDI66_RS04950 (RDI66_04950) | - | 1071174..1072118 (+) | 945 | WP_170355900.1 | thioredoxin family protein | - |
| RDI66_RS04955 (RDI66_04955) | - | 1072121..1073509 (+) | 1389 | WP_025587948.1 | conjugal transfer protein TraH | - |
| RDI66_RS04960 (RDI66_04960) | - | 1073513..1077082 (+) | 3570 | WP_170355898.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| RDI66_RS04965 (RDI66_04965) | eexR | 1077115..1077546 (-) | 432 | WP_000183214.1 | entry exclusion protein EexR | - |
| RDI66_RS04970 (RDI66_04970) | - | 1077604..1078137 (-) | 534 | WP_000566753.1 | FlhC family transcriptional regulator | - |
| RDI66_RS04975 (RDI66_04975) | - | 1078134..1078433 (-) | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| RDI66_RS04980 (RDI66_04980) | - | 1078430..1078978 (-) | 549 | WP_170355896.1 | lytic transglycosylase domain-containing protein | - |
| RDI66_RS04985 (RDI66_04985) | - | 1078965..1079627 (-) | 663 | WP_032081042.1 | DUF6475 domain-containing protein | - |
| RDI66_RS04990 (RDI66_04990) | - | 1079614..1080483 (-) | 870 | WP_025515463.1 | hypothetical protein | - |
| RDI66_RS04995 (RDI66_04995) | - | 1080539..1080790 (-) | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| RDI66_RS05000 (RDI66_05000) | - | 1080908..1081555 (+) | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
Sequence
Protein
Download Length: 227 a.a. Molecular weight: 26453.59 Da Isoelectric Point: 7.5402
>NTDB_id=874772 RDI66_RS04865 WP_156734072.1 1052359..1053042(-) (ideA) [Pasteurella multocida strain PM140]
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGLCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKLRDLRIRGIQGKSNCYVSGSC
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGLCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKLRDLRIRGIQGKSNCYVSGSC
Nucleotide
Download Length: 684 bp
>NTDB_id=874772 RDI66_RS04865 WP_156734072.1 1052359..1053042(-) (ideA) [Pasteurella multocida strain PM140]
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGCTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGTGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTGTCGGATCTCCATAACCTTGTACCATCTGTAGGAGAACTCAATGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAATGAACCAAGAGCCTATGGTCTATGTGATTTCGAAGTTGATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGACA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAGTGGGAAAAATTACGTGATTTGAGGATTAGAG
GCATTCAAGGTAAGTCTAATTGCTATGTATCAGGCAGCTGCTAG
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGCTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGTGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTGTCGGATCTCCATAACCTTGTACCATCTGTAGGAGAACTCAATGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAATGAACCAAGAGCCTATGGTCTATGTGATTTCGAAGTTGATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGACA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAGTGGGAAAAATTACGTGATTTGAGGATTAGAG
GCATTCAAGGTAAGTCTAATTGCTATGTATCAGGCAGCTGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ideA | Vibrio cholerae O1 str. 2010EL-1786 |
97.797 |
100 |
0.978 |
| dns | Vibrio parahaemolyticus RIMD 2210633 |
51.965 |
100 |
0.524 |
| dns | Aliivibrio fischeri ES114 |
51.304 |
100 |
0.52 |
| dns | Vibrio cholerae strain A1552 |
50.667 |
99.119 |
0.502 |
| dns | Campylobacter jejuni RM1221 |
38.393 |
98.678 |
0.379 |