Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   RDV59_RS05990 Genome accession   NZ_CP133476
Coordinates   1192526..1193869 (+) Length   447 a.a.
NCBI ID   WP_038675887.1    Uniprot ID   A0A448AAV4
Organism   Streptococcus salivarius strain LMG 11489     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187526..1198869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS05960 (RDV59_05960) - 1187585..1188352 (-) 768 WP_060775856.1 amino acid ABC transporter ATP-binding protein -
  RDV59_RS05965 (RDV59_05965) - 1188538..1189188 (-) 651 WP_002886253.1 amino acid ABC transporter permease -
  RDV59_RS05970 (RDV59_05970) - 1189200..1189898 (-) 699 WP_002886251.1 amino acid ABC transporter permease -
  RDV59_RS05975 (RDV59_05975) - 1189916..1190749 (-) 834 WP_037611665.1 transporter substrate-binding domain-containing protein -
  RDV59_RS05980 (RDV59_05980) - 1190759..1191526 (-) 768 WP_038675884.1 amino acid ABC transporter ATP-binding protein -
  RDV59_RS05985 (RDV59_05985) vicR 1191826..1192533 (+) 708 WP_002884978.1 response regulator YycF Regulator
  RDV59_RS05990 (RDV59_05990) vicK 1192526..1193869 (+) 1344 WP_038675887.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RDV59_RS05995 (RDV59_05995) vicX 1193875..1194684 (+) 810 WP_126405093.1 MBL fold metallo-hydrolase Regulator
  RDV59_RS06000 (RDV59_06000) - 1194743..1195102 (+) 360 WP_037611660.1 YbaN family protein -
  RDV59_RS06005 (RDV59_06005) - 1195154..1196368 (-) 1215 WP_038675892.1 aminoacyltransferase -
  RDV59_RS06010 (RDV59_06010) yidA 1196370..1197179 (-) 810 WP_002890845.1 sugar-phosphatase -
  RDV59_RS06015 (RDV59_06015) - 1197357..1198223 (+) 867 WP_038675894.1 GNAT family N-acetyltransferase -
  RDV59_RS06020 (RDV59_06020) - 1198306..1198692 (+) 387 WP_002884910.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 51002.17 Da        Isoelectric Point: 4.9199

>NTDB_id=874671 RDV59_RS05990 WP_038675887.1 1192526..1193869(+) (vicK) [Streptococcus salivarius strain LMG 11489]
MTSIGLNITSFELALLFTLLFVAFYFIFLAYRDYRQVKNIRKLTKRVKSLMAGNYNEELRLKGDPELLELADSLNDLSDV
FRLTHENLAQEKNRLSSVLSYMSDGVIATNRRGQITMINSTAQRLLNLDFETATQMSILDLLDGENPYTYSELLSKTPEI
HLSRRDANDEFVTLRVNFALIRKESGFISGLVAVLHDATEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDDGALNE
DIAPNFIKVSLDETNRMMRMISDLLALSRIDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQESNTGKTYEIIRDYPVNSI
WVEIDTDKMTQVVDNILNNAIKYSPDGGEITVSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGL
GLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAMMVDEWEME

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=874671 RDV59_RS05990 WP_038675887.1 1192526..1193869(+) (vicK) [Streptococcus salivarius strain LMG 11489]
ATGACTAGTATTGGCTTAAACATCACAAGCTTTGAACTAGCCTTACTCTTTACGCTCCTTTTTGTGGCTTTCTACTTTAT
TTTTCTTGCTTATCGTGATTATCGACAAGTCAAAAATATTCGAAAGTTGACCAAGAGGGTCAAGTCCTTAATGGCAGGTA
ACTATAATGAGGAGTTACGTTTAAAGGGTGATCCAGAGCTTTTAGAGCTAGCTGATAGCTTAAATGATTTATCGGACGTC
TTTCGTTTGACACATGAAAATCTAGCCCAGGAAAAAAACCGCTTATCATCAGTCCTCTCTTACATGAGTGATGGAGTCAT
TGCGACAAATCGTCGTGGTCAAATTACCATGATTAATAGCACAGCTCAGCGTTTGTTGAATCTAGATTTTGAGACAGCGA
CACAGATGTCCATTTTAGACTTATTAGATGGTGAAAATCCCTACACCTATAGTGAATTGCTGTCTAAGACTCCTGAAATT
CATTTGTCTCGTCGAGATGCCAACGATGAATTTGTGACCTTACGCGTTAACTTTGCTCTTATTCGTAAAGAGTCTGGATT
CATTTCAGGTCTGGTTGCCGTTCTTCATGATGCTACTGAGCAGGAAAAAGAAGAGCGTGAACGTCGTCTATTTGTTTCAA
ACGTTAGTCACGAGTTGCGTACACCTCTGACTTCTGTAAAATCTTATCTAGAGGCACTTGATGATGGAGCTCTCAACGAA
GATATCGCCCCTAACTTTATCAAAGTTTCGCTAGATGAGACCAATCGTATGATGCGAATGATTTCTGACCTCTTGGCACT
TTCTCGTATTGACAATAAGAGCACTCAACTTGATGTTGAAATGACTAATTTCACGGCCTTCATGACCTATATCTTGAATC
GTTTTGATCAAATCAAAAGTCAAGAAAGCAATACTGGTAAGACGTACGAAATTATTCGAGATTACCCTGTAAATTCTATT
TGGGTGGAGATTGATACGGATAAGATGACTCAGGTCGTGGATAATATTCTTAACAATGCCATCAAGTATTCTCCTGATGG
TGGTGAGATTACAGTGTCCATGAAGACAACTGATTCACAGTTGATTGTTTCTATTTCTGACCAAGGTTTAGGTATCCCTA
AGAAAGATTTACCTTTGATTTTCGACCGTTTTTACCGTGTTGATAAGGCCAGAAGTCGTGCCCAGGGTGGAACGGGTCTA
GGCTTGTCCATTGCCAAAGAGATTATTAAACAACATAAGGGCTTCATTTGGGCTAAGAGTGAGTATGGTAAGGGTTCAAC
ATTTACAATTGTGCTTCCATATGACAAGGATGCCATGATGGTTGATGAATGGGAGATGGAGTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(208-272)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(325-435)

PAS fold (PAS)

(94-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448AAV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

73.671

92.617

0.682
  micB Streptococcus pneumoniae Cp1015

67.436

96.868

0.653