Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RDV59_RS05995 Genome accession   NZ_CP133476
Coordinates   1193875..1194684 (+) Length   269 a.a.
NCBI ID   WP_126405093.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188875..1199684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS05970 (RDV59_05970) - 1189200..1189898 (-) 699 WP_002886251.1 amino acid ABC transporter permease -
  RDV59_RS05975 (RDV59_05975) - 1189916..1190749 (-) 834 WP_037611665.1 transporter substrate-binding domain-containing protein -
  RDV59_RS05980 (RDV59_05980) - 1190759..1191526 (-) 768 WP_038675884.1 amino acid ABC transporter ATP-binding protein -
  RDV59_RS05985 (RDV59_05985) vicR 1191826..1192533 (+) 708 WP_002884978.1 response regulator YycF Regulator
  RDV59_RS05990 (RDV59_05990) vicK 1192526..1193869 (+) 1344 WP_038675887.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RDV59_RS05995 (RDV59_05995) vicX 1193875..1194684 (+) 810 WP_126405093.1 MBL fold metallo-hydrolase Regulator
  RDV59_RS06000 (RDV59_06000) - 1194743..1195102 (+) 360 WP_037611660.1 YbaN family protein -
  RDV59_RS06005 (RDV59_06005) - 1195154..1196368 (-) 1215 WP_038675892.1 aminoacyltransferase -
  RDV59_RS06010 (RDV59_06010) yidA 1196370..1197179 (-) 810 WP_002890845.1 sugar-phosphatase -
  RDV59_RS06015 (RDV59_06015) - 1197357..1198223 (+) 867 WP_038675894.1 GNAT family N-acetyltransferase -
  RDV59_RS06020 (RDV59_06020) - 1198306..1198692 (+) 387 WP_002884910.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30007.86 Da        Isoelectric Point: 5.3499

>NTDB_id=874672 RDV59_RS05995 WP_126405093.1 1193875..1194684(+) (vicX) [Streptococcus salivarius strain LMG 11489]
MSDLGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGMD
IYANEKTWQIMDSKNMLGKIDNSQKHVFSRDKLLTFGDLDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMAG
IIENADGYLIESNHDVEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAHMTMEN
QLARADFGVGTDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=874672 RDV59_RS05995 WP_126405093.1 1193875..1194684(+) (vicX) [Streptococcus salivarius strain LMG 11489]
ATCTCAGATTTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACTGGTAATTCCTTTTACTTGGAAACTCCAGAGAA
GAAGATTCTTGTAGATGCTGGTTTGTCTGGTAAGAAAATCACAAGTTTGCTAGCTGAGATTGATCGTGACCCGAGTGATT
TGGATGCAATCTTAGTAACGCATGAACACAAGGATCACATCCATGGCGTAGGCGTTTTAGCTCGTAAATATGGCATGGAT
ATCTACGCCAACGAGAAAACCTGGCAGATTATGGATAGTAAAAATATGCTTGGCAAGATTGATAATAGCCAGAAACATGT
TTTTTCTCGTGACAAGCTTCTGACCTTTGGAGACCTTGATATTGAGTCTTTTGGAGTTAGTCACGATGCTATTGATCCAC
AGTTCTATCGCTTTATGAAAGATGGAAAGAGTTTTGTCATGTTAACGGATACGGGTTATGTTTCTGATCGTATGGCAGGT
ATTATTGAGAATGCCGACGGCTATCTGATTGAGTCCAATCATGATGTTGAAATCCTTAGAGCAGGTTCATATCCTTGGTC
AACCAAGCAACGTATCCTCTCTGATCAAGGTCACTTGTGTAATGAAGATGGAGCGGATGCTATGATTCGTACCATCGGTA
ATAAAACTAAAAAGATCTACTTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAGTTGGCCCACATGACGATGGAAAAT
CAGTTGGCACGTGCTGACTTTGGTGTTGGAACTGACTTTAAAGTTTATGATACCTCACCAGACACAGCGACTCCACTGAC
AGACATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77