Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   RDV53_RS06755 Genome accession   NZ_CP133470
Coordinates   1370596..1371264 (+) Length   222 a.a.
NCBI ID   WP_005695555.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae ATCC 33392 strain DSM 8978     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1365596..1376264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV53_RS06720 (RDV53_06720) rpmG 1366447..1366617 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  RDV53_RS06725 (RDV53_06725) rpmB 1366629..1366865 (-) 237 WP_005599762.1 50S ribosomal protein L28 -
  RDV53_RS06730 (RDV53_06730) radC 1367084..1367749 (-) 666 WP_005695550.1 DNA repair protein RadC -
  RDV53_RS06735 (RDV53_06735) coaBC 1367951..1369153 (+) 1203 WP_005695551.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  RDV53_RS06740 (RDV53_06740) dut 1369227..1369682 (+) 456 WP_005695552.1 dUTP diphosphatase -
  RDV53_RS06745 (RDV53_06745) slmA 1369686..1370339 (+) 654 WP_005695553.1 nucleoid occlusion factor SlmA -
  RDV53_RS06750 (RDV53_06750) - 1370361..1370579 (+) 219 WP_005695554.1 YheU family protein -
  RDV53_RS06755 (RDV53_06755) crp 1370596..1371264 (+) 669 WP_005695555.1 cAMP-activated global transcriptional regulator CRP Regulator
  RDV53_RS06760 (RDV53_06760) nagE 1371772..1373238 (-) 1467 WP_005695556.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  RDV53_RS06765 (RDV53_06765) - 1373456..1374145 (+) 690 WP_005698367.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  RDV53_RS06770 (RDV53_06770) - 1374157..1375095 (+) 939 WP_005695558.1 N-acetylmannosamine kinase -
  RDV53_RS06775 (RDV53_06775) - 1375088..1375954 (+) 867 WP_005695559.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25131.91 Da        Isoelectric Point: 6.6936

>NTDB_id=874449 RDV53_RS06755 WP_005695555.1 1370596..1371264(+) (crp) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
MSEDVELLEEQKPQDDDQQRDPALDWFLTHCHLHKYPAKSTLIHAGEDANILYFLIKGTVMVSSKDDEGKEMILSYLGAG
QFFGEAGLFDEGSKRSAWVKTKTPCEIAEISYKKYRQLIQINPEILMFLTAQLSKRLQNTSRQVTNLAFLDVAGRIAQAL
MHLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGTR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=874449 RDV53_RS06755 WP_005695555.1 1370596..1371264(+) (crp) [Haemophilus parainfluenzae ATCC 33392 strain DSM 8978]
ATGTCAGAAGATGTAGAATTACTAGAAGAACAAAAGCCGCAGGACGATGATCAGCAGCGCGATCCTGCTCTGGATTGGTT
CCTTACTCACTGTCATTTACATAAATATCCAGCAAAATCGACCTTAATTCATGCGGGTGAAGATGCCAATATTTTATATT
TCTTAATTAAAGGAACCGTGATGGTTTCATCGAAAGATGATGAAGGCAAAGAGATGATTTTATCTTATTTAGGTGCCGGA
CAATTTTTTGGTGAAGCGGGTTTATTTGATGAAGGCTCGAAACGTTCTGCTTGGGTGAAAACGAAAACGCCTTGTGAAAT
TGCGGAAATTTCCTATAAAAAATATCGTCAGCTGATTCAAATTAATCCTGAAATTTTAATGTTCCTTACTGCTCAGTTAT
CAAAACGCTTGCAAAATACATCGCGACAAGTGACTAACTTGGCCTTTTTAGATGTGGCAGGACGTATTGCTCAGGCGCTT
ATGCATTTAGCAAAACAACCTGAAGCGATGACGCATCCTGATGGTATGCAGATTAAAATTACACGTCAGGAAATCGGTCA
AATGGTAGGGTGCTCGCGTGAAACCGTAGGGCGAATCATTAAGATGCTGGAAGATCAAAATTTAATCCATGCGCACGGCA
AAACCATTGTGGTTTACGGCACTCGATAG

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(34-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(154-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

86.607

100

0.874
  crp Vibrio cholerae strain A1552

73.529

91.892

0.676
  crp Acinetobacter baumannii D1279779

46.734

89.64

0.419