Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   RDV50_RS05695 Genome accession   NZ_CP133462
Coordinates   1180203..1180490 (-) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria subflava strain LMG 5313     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1175203..1185490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS05680 (RDV50_05680) - 1177550..1178380 (-) 831 WP_137041351.1 integrase core domain-containing protein -
  RDV50_RS05685 (RDV50_05685) pyrI 1178433..1178894 (-) 462 WP_137041350.1 aspartate carbamoyltransferase regulatory subunit -
  RDV50_RS05690 (RDV50_05690) pyrB 1178905..1179825 (-) 921 WP_003684701.1 aspartate carbamoyltransferase -
  RDV50_RS05695 (RDV50_05695) comE 1180203..1180490 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  RDV50_RS05700 (RDV50_05700) - 1180770..1181600 (+) 831 WP_137041108.1 integrase core domain-containing protein -
  RDV50_RS05705 (RDV50_05705) - 1181712..1182365 (-) 654 WP_137041349.1 IS1595 family transposase -
  RDV50_RS05710 (RDV50_05710) - 1182515..1183180 (+) 666 WP_137041348.1 hypothetical protein -
  RDV50_RS05715 (RDV50_05715) - 1183456..1184319 (+) 864 WP_137041347.1 GNAT family N-acetyltransferase -
  RDV50_RS05720 (RDV50_05720) - 1184343..1184468 (+) 126 WP_279638369.1 hypothetical protein -
  RDV50_RS05725 (RDV50_05725) - 1184534..1185037 (-) 504 WP_003684697.1 hypothetical protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=874390 RDV50_RS05695 WP_036472233.1 1180203..1180490(-) (comE) [Neisseria subflava strain LMG 5313]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=874390 RDV50_RS05695 WP_036472233.1 1180203..1180490(-) (comE) [Neisseria subflava strain LMG 5313]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCGGCGTTCTCTTTGGCTGCCGTGAACATCAATACCGCGTC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4