Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RDV50_RS01255 Genome accession   NZ_CP133462
Coordinates   270852..271385 (-) Length   177 a.a.
NCBI ID   WP_137040609.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 265852..276385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS01230 (RDV50_01230) argB 266631..267518 (+) 888 WP_137040611.1 acetylglutamate kinase -
  RDV50_RS01235 (RDV50_01235) eno 267780..269066 (+) 1287 WP_049328681.1 phosphopyruvate hydratase -
  RDV50_RS01240 (RDV50_01240) ftsB 269090..269365 (+) 276 WP_003679613.1 cell division protein FtsB -
  RDV50_RS01245 (RDV50_01245) - 269467..269958 (+) 492 WP_063068729.1 DUF1841 family protein -
  RDV50_RS01250 (RDV50_01250) - 270071..270778 (+) 708 WP_137040610.1 SIMPL domain-containing protein -
  RDV50_RS01255 (RDV50_01255) ssb 270852..271385 (-) 534 WP_137040609.1 single-stranded DNA-binding protein Machinery gene
  RDV50_RS01260 (RDV50_01260) - 271387..272769 (-) 1383 WP_003685608.1 MFS transporter -
  RDV50_RS01265 (RDV50_01265) - 272971..273594 (-) 624 WP_039863563.1 lytic transglycosylase domain-containing protein -
  RDV50_RS01270 (RDV50_01270) ppx 273768..275276 (+) 1509 WP_137040608.1 exopolyphosphatase -
  RDV50_RS01275 (RDV50_01275) rbfA 275364..275735 (+) 372 WP_003685554.1 30S ribosome-binding factor RbfA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19764.80 Da        Isoelectric Point: 5.7974

>NTDB_id=874371 RDV50_RS01255 WP_137040609.1 270852..271385(-) (ssb) [Neisseria subflava strain LMG 5313]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSIATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGSRNDNSGGAPYDDGYNQGQGGHSSQSSYQQAPQQQYQSAPAQEPPAAPARRPA
PAQPTAPVDDIDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=874371 RDV50_RS01255 WP_137040609.1 270852..271385(-) (ssb) [Neisseria subflava strain LMG 5313]
ATGTCATTGAATAAAGTTATCCTCATCGGCCGTCTCGGCCGCGACCCGGAAGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCATTGCCACCAGCGAAACGTGGAACGACCGCAACGGCCAACGCGTAGAACGTACCGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATCGCCGGTCAATACCTGCGTAAAGGCAGCCAAGTGTACCTGGAAGGCCGTATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAGCGCACCGCTTACGACATCATTGCCAATGAGATGAAAATGCTCGG
CAGCCGTAACGACAACAGCGGCGGCGCACCATACGATGACGGCTACAACCAAGGCCAAGGCGGTCATTCAAGCCAAAGCA
GCTACCAACAAGCACCACAACAGCAATACCAATCTGCTCCGGCTCAAGAGCCCCCAGCCGCCCCAGCCCGTCGTCCTGCC
CCGGCACAACCGACCGCTCCGGTTGATGATATCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

79.67

100

0.819
  ssb Neisseria meningitidis MC58

79.121

100

0.814
  ssb Vibrio cholerae strain A1552

48.913

100

0.508
  ssb Glaesserella parasuis strain SC1401

47.027

100

0.492