Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RBG92_RS16980 | Genome accession | NZ_CP133453 |
| Coordinates | 3475621..3476157 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain CREC8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3451945..3496471 | 3475621..3476157 | within | 0 |
Gene organization within MGE regions
Location: 3451945..3496471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RBG92_RS16870 (RBG92_16870) | - | 3452199..3453779 (+) | 1581 | Protein_3286 | SopA family protein | - |
| RBG92_RS16875 (RBG92_16875) | ubiC | 3454002..3454499 (+) | 498 | WP_001326644.1 | chorismate lyase | - |
| RBG92_RS16880 (RBG92_16880) | ubiA | 3454512..3455384 (+) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| RBG92_RS16885 (RBG92_16885) | plsB | 3455539..3457962 (-) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| RBG92_RS16890 (RBG92_16890) | dgkA | 3458133..3458501 (+) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| RBG92_RS16895 (RBG92_16895) | lexA | 3458611..3459219 (+) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| RBG92_RS16900 (RBG92_16900) | dinF | 3459292..3460617 (+) | 1326 | WP_001326646.1 | MATE family efflux transporter DinF | - |
| RBG92_RS16905 (RBG92_16905) | yjbJ | 3460733..3460942 (+) | 210 | WP_001030593.1 | CsbD family protein | - |
| RBG92_RS16910 (RBG92_16910) | zur | 3460984..3461499 (-) | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| RBG92_RS16920 (RBG92_16920) | - | 3461817..3462802 (+) | 986 | Protein_3295 | DUF2713 domain-containing protein | - |
| RBG92_RS16925 (RBG92_16925) | dusA | 3463165..3464202 (+) | 1038 | WP_001298868.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| RBG92_RS16930 (RBG92_16930) | pspG | 3464336..3464578 (+) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| RBG92_RS16935 (RBG92_16935) | qorA | 3464744..3465727 (-) | 984 | WP_000235508.1 | quinone oxidoreductase | - |
| RBG92_RS16940 (RBG92_16940) | dnaB | 3465810..3467225 (+) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| RBG92_RS16945 (RBG92_16945) | alr | 3467278..3468357 (+) | 1080 | WP_001147328.1 | alanine racemase | - |
| RBG92_RS16950 (RBG92_16950) | tyrB | 3468610..3469803 (+) | 1194 | WP_000486985.1 | aromatic amino acid transaminase | - |
| RBG92_RS16955 (RBG92_16955) | yjbS | 3470305..3470508 (-) | 204 | WP_001321562.1 | protein YjbS | - |
| RBG92_RS16960 (RBG92_16960) | aphA | 3470910..3471623 (+) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| RBG92_RS16965 (RBG92_16965) | yjbQ | 3471734..3472150 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| RBG92_RS16970 (RBG92_16970) | yjbR | 3472154..3472510 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| RBG92_RS16975 (RBG92_16975) | uvrA | 3472545..3475367 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| RBG92_RS16980 (RBG92_16980) | ssb | 3475621..3476157 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| RBG92_RS16985 (RBG92_16985) | - | 3476316..3477563 (+) | 1248 | WP_000414651.1 | site-specific integrase | - |
| RBG92_RS16990 (RBG92_16990) | - | 3477550..3479088 (+) | 1539 | WP_001333349.1 | site-specific integrase | - |
| RBG92_RS16995 (RBG92_16995) | - | 3479105..3481138 (+) | 2034 | WP_000807722.1 | hypothetical protein | - |
| RBG92_RS17000 (RBG92_17000) | - | 3481131..3481550 (+) | 420 | WP_001062122.1 | hypothetical protein | - |
| RBG92_RS17005 (RBG92_17005) | avs4 | 3481626..3486389 (+) | 4764 | WP_106466489.1 | AVAST type 4 anti-phage nuclease Avs4 | - |
| RBG92_RS17010 (RBG92_17010) | - | 3486928..3487749 (-) | 822 | WP_001272932.1 | abortive infection system antitoxin AbiGi family protein | - |
| RBG92_RS17015 (RBG92_17015) | yjcB | 3488157..3488438 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
| RBG92_RS17020 (RBG92_17020) | pdeC | 3488868..3490454 (+) | 1587 | WP_000019548.1 | c-di-GMP phosphodiesterase PdeC | - |
| RBG92_RS17025 (RBG92_17025) | soxS | 3490457..3490780 (-) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| RBG92_RS17030 (RBG92_17030) | soxR | 3490866..3491330 (+) | 465 | WP_000412430.1 | redox-sensitive transcriptional activator SoxR | - |
| RBG92_RS17035 (RBG92_17035) | ghxP | 3491876..3493225 (+) | 1350 | WP_000106882.1 | guanine/hypoxanthine transporter GhxP | - |
| RBG92_RS17040 (RBG92_17040) | yjcE | 3493376..3495025 (+) | 1650 | WP_000402207.1 | Na+/H+ antiporter | - |
| RBG92_RS17045 (RBG92_17045) | espX5 | 3495179..3496471 (-) | 1293 | WP_001270095.1 | T3SS effector pentapeptide repeat protein EspX5 | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=874319 RBG92_RS16980 WP_000168305.1 3475621..3476157(+) (ssb) [Escherichia coli strain CREC8]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=874319 RBG92_RS16980 WP_000168305.1 3475621..3476157(+) (ssb) [Escherichia coli strain CREC8]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |