Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RDU00_RS20845 Genome accession   NZ_CP133449
Coordinates   3954413..3954931 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain KK195     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3949413..3959931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS20815 (RDU00_20790) yyaJ 3949916..3951271 (+) 1356 WP_003243011.1 MFS transporter -
  RDU00_RS20820 (RDU00_20795) maa 3951305..3951859 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  RDU00_RS20825 (RDU00_20800) yyaH 3951877..3952257 (-) 381 WP_003244460.1 VOC family protein -
  RDU00_RS20830 (RDU00_20805) ccpB 3952313..3953248 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  RDU00_RS20835 (RDU00_20810) xth 3953307..3954065 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  RDU00_RS20840 (RDU00_20815) rpsR 3954130..3954369 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  RDU00_RS20845 (RDU00_20820) ssbA 3954413..3954931 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  RDU00_RS20850 (RDU00_20825) rpsF 3954972..3955259 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  RDU00_RS20855 (RDU00_20830) ychF 3955370..3956470 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  RDU00_RS20860 (RDU00_20835) yyaE 3956597..3958600 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  RDU00_RS20865 (RDU00_20840) yyzM 3958651..3958857 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=874256 RDU00_RS20845 WP_003219228.1 3954413..3954931(-) (ssbA) [Bacillus subtilis strain KK195]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=874256 RDU00_RS20845 WP_003219228.1 3954413..3954931(-) (ssbA) [Bacillus subtilis strain KK195]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378