Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   RDU00_RS19010 Genome accession   NZ_CP133449
Coordinates   3602657..3602776 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain KK195     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3597657..3607776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS18985 (RDU00_18965) albG 3597821..3598522 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  RDU00_RS18990 (RDU00_18970) ywhL 3598528..3599904 (-) 1377 WP_003244415.1 YncE family protein -
  RDU00_RS18995 (RDU00_18975) ywhK 3599943..3601298 (-) 1356 WP_003227552.1 YncE family protein -
  RDU00_RS19000 (RDU00_18980) - 3601295..3601525 (-) 231 WP_009968328.1 hypothetical protein -
  RDU00_RS19005 (RDU00_18985) rapF 3601528..3602673 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  RDU00_RS19010 (RDU00_18990) phrF 3602657..3602776 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  RDU00_RS19015 (RDU00_18995) ywhH 3602875..3603348 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  RDU00_RS19020 (RDU00_19000) speB 3603380..3604252 (-) 873 WP_003227545.1 agmatinase -
  RDU00_RS19025 (RDU00_19005) speE 3604313..3605143 (-) 831 WP_003227543.1 spermidine synthase -
  RDU00_RS19030 (RDU00_19010) pbpG 3605345..3607420 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=874253 RDU00_RS19010 WP_009968329.1 3602657..3602776(+) (phrF) [Bacillus subtilis strain KK195]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=874253 RDU00_RS19010 WP_009968329.1 3602657..3602776(+) (phrF) [Bacillus subtilis strain KK195]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487