Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RDU00_RS15985 Genome accession   NZ_CP133449
Coordinates   3008330..3008974 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain KK195     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3003330..3013974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS15950 (RDU00_15940) mrpB 3004522..3004953 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  RDU00_RS15955 (RDU00_15945) mrpC 3004953..3005294 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  RDU00_RS15960 (RDU00_15950) mrpD 3005287..3006768 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  RDU00_RS15965 (RDU00_15955) mrpE 3006774..3007250 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  RDU00_RS15970 (RDU00_15960) mrpF 3007250..3007534 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  RDU00_RS15975 (RDU00_15965) mnhG 3007518..3007892 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  RDU00_RS15980 (RDU00_15970) yuxO 3007931..3008311 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  RDU00_RS15985 (RDU00_15975) comA 3008330..3008974 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  RDU00_RS15990 (RDU00_15980) comP 3009055..3011364 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  RDU00_RS15995 (RDU00_15985) comX 3011379..3011546 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  RDU00_RS16000 (RDU00_15990) comQ 3011534..3012433 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  RDU00_RS16005 (RDU00_15995) degQ 3012618..3012758 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  RDU00_RS16010 (RDU00_16000) - 3012980..3013105 (+) 126 WP_003228793.1 hypothetical protein -
  RDU00_RS16015 (RDU00_16005) - 3013219..3013587 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=874238 RDU00_RS15985 WP_003220716.1 3008330..3008974(-) (comA) [Bacillus subtilis strain KK195]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=874238 RDU00_RS15985 WP_003220716.1 3008330..3008974(-) (comA) [Bacillus subtilis strain KK195]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1