Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RDY86_RS05435 Genome accession   NZ_CP133440
Coordinates   1221593..1222144 (+) Length   183 a.a.
NCBI ID   WP_004719395.1    Uniprot ID   -
Organism   Yersinia ruckeri strain Barren Creek     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1216593..1227144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDY86_RS05425 (RDY86_05425) - 1218067..1218420 (+) 354 WP_038276392.1 MmcQ/YjbR family DNA-binding protein -
  RDY86_RS05430 (RDY86_05430) uvrA 1218470..1221304 (-) 2835 WP_004719397.1 excinuclease ABC subunit UvrA -
  RDY86_RS05435 (RDY86_05435) ssb 1221593..1222144 (+) 552 WP_004719395.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RDY86_RS05440 (RDY86_05440) - 1222418..1223086 (+) 669 WP_004719393.1 glutathione S-transferase family protein -
  RDY86_RS05445 (RDY86_05445) - 1223532..1224899 (+) 1368 WP_038276390.1 NCS2 family permease -
  RDY86_RS05450 (RDY86_05450) - 1225108..1226757 (+) 1650 WP_038241247.1 Na+/H+ antiporter -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19455.41 Da        Isoelectric Point: 4.9567

>NTDB_id=874096 RDY86_RS05435 WP_004719395.1 1221593..1222144(+) (ssb) [Yersinia ruckeri strain Barren Creek]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWQDQSGQERYTTEVVVNVGGTMQMLGGRQGGGAPAGGTPAGSNDGAQGGWGQPQQPQGSNQFSGGQTSRPAQ
PAPAPQQQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=874096 RDY86_RS05435 WP_004719395.1 1221593..1222144(+) (ssb) [Yersinia ruckeri strain Barren Creek]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCGAACGG
TGGGGCAGTTGCCAACATCACATTGGCCACTTCCGAAAGCTGGCGTGATAAGCAAACCGGCGAGCAGAAAGAAAAAACCG
AATGGCACCGCGTAGTGTTGTTCGGCAAGCTGGCAGAAGTCGCGGGTGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCGCACTGCAAACCCGGAAATGGCAGGATCAAAGTGGCCAGGAACGTTACACCACCGAAGTGGTTGTTAACGTGGG
TGGTACCATGCAAATGCTGGGTGGTCGTCAAGGCGGCGGTGCTCCAGCGGGTGGTACACCAGCGGGTTCCAATGATGGTG
CGCAAGGCGGTTGGGGTCAGCCTCAGCAACCTCAGGGTAGCAATCAGTTCAGCGGTGGCCAGACTTCACGTCCAGCACAG
CCTGCACCCGCGCCACAGCAGCAAGGCGGCAATGAGCCACCAATGGACTTCGACGACGACATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.269

100

0.765
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.579
  ssb Neisseria meningitidis MC58

45.989

100

0.47
  ssb Neisseria gonorrhoeae MS11

45.946

100

0.464