Detailed information NTG0874057

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: RDJ12_RS06980
• Genome accession: NZ_CP133437
• Coordinates: 1491457..1492641 (-)
• Length: 394 a.a.
• NCBI ID: WP_261920055.1
• Uniprot ID: A0A8E3SAJ5
• Organism: Mergibacter septicus strain 19Y0039
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1486457..1497641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDJ12_RS06965 (RDJ12_06965)	rluA	1486805..1487464 (-)	660	WP_261920058.1	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	-
RDJ12_RS06970 (RDJ12_06970)	rapA	1487467..1490382 (-)	2916	WP_261920057.1	RNA polymerase-associated protein RapA	-
RDJ12_RS06975 (RDJ12_06975)	pnuC	1490661..1491347 (+)	687	WP_261920056.1	nicotinamide riboside transporter PnuC	-
RDJ12_RS06980 (RDJ12_06980)	dprA	1491457..1492641 (-)	1185	WP_261920055.1	DNA-processing protein DprA	Machinery gene
RDJ12_RS06985 (RDJ12_06985)	def	1492881..1493396 (+)	516	WP_261920054.1	peptide deformylase	-
RDJ12_RS06990 (RDJ12_06990)	fmt	1493432..1494388 (+)	957	WP_261920053.1	methionyl-tRNA formyltransferase	-
RDJ12_RS06995 (RDJ12_06995)	rsmB	1494400..1495812 (+)	1413	WP_373463107.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
RDJ12_RS07000 (RDJ12_07000)	trkA	1495834..1497210 (+)	1377	WP_261920052.1	Trk system potassium transporter TrkA	-

Sequence

Protein

• Length: 394 a.a.
• Molecular weight: 43746.50 Da
• Isoelectric Point: 6.2788

>NTDB_id=874057 RDJ12_RS06980 WP_261920055.1 1491457..1492641(-) (dprA) [Mergibacter septicus strain 19Y0039]
MYDLAELLRLSLVPQIGVVKIQQLLAQISLSELSCYSAKELQQIGWKENQIHAWLKPKQAIIDKTLEWQQQPQQHILTIF
DPIYPPLLKQIPAPPPLLYIKGNLESLNTAQIAMVGSRHCSRYGEQLAIQFATELTQHNLTITSGLAIGIDSLSHQATLQ
AQGVTIAVLGNGLNRIYPYRHQKLAQQIIEQGGALVSELLPNIPPIAENFPRRNRIISGLTLGTLVVEATEKSGSLITAR
YALEQNREVFAIPGALYNGHSQGCHQLIKQGAWLVENVKDILDILSSQFLHDYLHQSLLEQNFTDTLRPSSLEDLKTAPI
SNLNSPKAPSSPPIEPQIPPEYLTLYQHLSTTPIPPDDLATNLKITIPELLPALLELELQGVIKQVEGGYVKLF

Nucleotide

• Length: 1185 bp

>NTDB_id=874057 RDJ12_RS06980 WP_261920055.1 1491457..1492641(-) (dprA) [Mergibacter septicus strain 19Y0039]
ATGTACGATTTAGCGGAACTGTTACGCCTTAGTCTAGTACCACAAATAGGCGTGGTAAAAATCCAACAACTTTTAGCACA
AATCTCATTATCAGAATTATCTTGCTATTCAGCCAAAGAATTACAACAAATAGGTTGGAAAGAAAATCAAATTCACGCTT
GGCTGAAGCCTAAGCAAGCGATCATTGACAAAACATTAGAATGGCAACAACAACCGCAACAACATATTCTGACGATTTTT
GATCCTATTTATCCCCCTTTATTAAAACAAATTCCAGCACCACCGCCCCTTCTTTATATCAAAGGAAATCTTGAGAGTCT
GAATACCGCCCAGATTGCAATGGTGGGCAGTCGCCACTGTTCTCGTTATGGTGAACAACTTGCCATTCAATTTGCCACGG
AACTAACTCAGCATAACTTAACCATTACCAGTGGTTTAGCCATTGGTATTGATAGCCTTAGTCATCAAGCCACTTTACAA
GCTCAGGGCGTTACCATTGCTGTATTAGGCAATGGATTAAACCGAATCTACCCATATCGGCATCAAAAACTAGCCCAACA
AATTATTGAACAAGGAGGAGCATTAGTCTCAGAATTACTCCCAAACATACCACCTATTGCCGAAAATTTTCCTCGCCGTA
ATCGGATTATCAGTGGCCTTACACTCGGTACATTAGTAGTTGAAGCGACAGAAAAAAGTGGTTCTCTTATCACTGCTCGT
TATGCGTTAGAACAAAATAGAGAGGTATTTGCCATTCCCGGGGCTTTATATAATGGTCACAGTCAAGGGTGCCATCAATT
AATTAAACAAGGAGCTTGGTTAGTCGAAAATGTGAAAGATATTTTAGATATTCTTTCTTCCCAATTTTTACACGATTATC
TTCATCAATCGCTACTTGAACAAAATTTTACTGATACTCTCCGTCCATCATCTCTGGAAGACCTAAAAACAGCCCCTATT
TCCAATCTTAATAGCCCAAAAGCTCCCTCATCACCACCCATAGAACCACAAATACCACCCGAATATCTCACGCTTTATCA
ACATCTTAGCACCACGCCAATACCGCCAGATGACCTTGCTACAAATCTTAAAATTACAATCCCAGAGTTATTACCCGCAC
TGCTAGAACTTGAGTTACAAGGGGTCATTAAACAAGTCGAGGGAGGGTATGTGAAACTATTTTAA

Domains

Predicted by InterproScan.

• DprA winged helix domain (DprA_WH) (331-389)

• DNA recombination-mediator protein A (DNA_processg_A) (71-276)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Glaesserella parasuis strain SC1401	50.384	99.239	0.5
dprA	Haemophilus influenzae Rd KW20	53.672	89.848	0.482
dprA	Vibrio campbellii strain DS40M4	46.292	99.239	0.459
dprA	Vibrio cholerae strain A1552	43.223	99.239	0.429
dprA	Legionella pneumophila strain ERS1305867	40.554	100	0.409