Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RDJ12_RS04565 Genome accession   NZ_CP133437
Coordinates   984881..985423 (+) Length   180 a.a.
NCBI ID   WP_261920474.1    Uniprot ID   A0A8E3SA73
Organism   Mergibacter septicus strain 19Y0039     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 979881..990423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ12_RS04550 (RDJ12_04550) - 979969..980634 (-) 666 WP_261920477.1 methionine ABC transporter permease -
  RDJ12_RS04555 (RDJ12_04555) metN 980627..981661 (-) 1035 WP_261920476.1 methionine ABC transporter ATP-binding protein MetN -
  RDJ12_RS04560 (RDJ12_04560) uvrA 981893..984730 (-) 2838 WP_261920475.1 excinuclease ABC subunit UvrA -
  RDJ12_RS04565 (RDJ12_04565) ssb 984881..985423 (+) 543 WP_261920474.1 single-stranded DNA-binding protein Machinery gene
  RDJ12_RS04570 (RDJ12_04570) - 985731..987029 (-) 1299 WP_261920473.1 ATP-binding protein -
  RDJ12_RS04575 (RDJ12_04575) thiM 987369..988190 (+) 822 WP_261920472.1 hydroxyethylthiazole kinase -
  RDJ12_RS04580 (RDJ12_04580) thiE 988177..988821 (+) 645 WP_261920471.1 thiamine phosphate synthase -
  RDJ12_RS04585 (RDJ12_04585) thiD 988823..989611 (+) 789 WP_261920470.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RDJ12_RS04590 (RDJ12_04590) grxD 989825..990166 (-) 342 WP_261920469.1 Grx4 family monothiol glutaredoxin -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20518.78 Da        Isoelectric Point: 5.2802

>NTDB_id=874048 RDJ12_RS04565 WP_261920474.1 984881..985423(+) (ssb) [Mergibacter septicus strain 19Y0039]
MAGVNKVIIVGNLGNDPELRTFPNGDAVANISVATSERWQDKQTGEWREVTEWHRIVLFRRLAEIAGEYLRKGSKVYVEG
KLRTRKWQDQNGQDRYSTEIQADNLQMLDSRADRQQSGGYMPNQTMAPTPKTQNYMPQQQSYAAPQPNHIAPQQNYSQPT
QQPAPVSPEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=874048 RDJ12_RS04565 WP_261920474.1 984881..985423(+) (ssb) [Mergibacter septicus strain 19Y0039]
ATGGCAGGTGTGAATAAAGTAATTATTGTCGGAAATTTGGGAAATGATCCTGAATTACGCACATTCCCAAATGGTGATGC
AGTAGCAAATATTAGCGTTGCAACGAGTGAACGTTGGCAAGATAAACAAACAGGTGAATGGCGAGAAGTCACAGAATGGC
ATCGTATCGTATTATTCCGTCGTCTTGCTGAAATTGCTGGTGAATATCTACGCAAAGGTTCAAAAGTTTATGTTGAAGGG
AAACTCAGAACCCGCAAATGGCAAGATCAAAATGGTCAAGATCGATATAGCACAGAAATTCAGGCAGATAACTTACAAAT
GCTTGACAGCCGTGCTGATCGTCAACAATCGGGTGGTTATATGCCTAATCAAACAATGGCACCAACACCAAAAACGCAAA
ATTATATGCCACAACAACAAAGTTACGCTGCCCCTCAGCCAAACCATATTGCTCCACAGCAAAATTACAGCCAACCAACA
CAACAACCTGCACCAGTATCACCAGAACCCCCAATGGATTTTGATGATGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

65.385

100

0.661
  ssb Vibrio cholerae strain A1552

57.377

100

0.583
  ssb Neisseria gonorrhoeae MS11

43.316

100

0.45
  ssb Neisseria meningitidis MC58

44.199

100

0.444