Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHU70_RS07930 Genome accession   NZ_CP148746
Coordinates   1623321..1623857 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Z1322HEC0010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1618321..1628857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU70_RS07910 (WHU70_07905) aphA 1618610..1619323 (+) 714 WP_001315956.1 acid phosphatase AphA -
  WHU70_RS07915 (WHU70_07910) yjbQ 1619434..1619850 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WHU70_RS07920 (WHU70_07915) yjbR 1619854..1620210 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WHU70_RS07925 (WHU70_07920) uvrA 1620245..1623067 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  WHU70_RS07930 (WHU70_07925) ssb 1623321..1623857 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WHU70_RS07935 (WHU70_07930) yjcB 1623956..1624237 (-) 282 WP_001295689.1 YjcB family protein -
  WHU70_RS07940 (WHU70_07935) pdeC 1624667..1626253 (+) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  WHU70_RS07945 (WHU70_07940) soxS 1626256..1626579 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WHU70_RS07950 (WHU70_07945) soxR 1626665..1627129 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=873427 WHU70_RS07930 WP_000168305.1 1623321..1623857(+) (ssb) [Escherichia coli strain Z1322HEC0010]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=873427 WHU70_RS07930 WP_000168305.1 1623321..1623857(+) (ssb) [Escherichia coli strain Z1322HEC0010]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489