Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RCF98_RS01115 Genome accession   NZ_CP133218
Coordinates   248714..249214 (+) Length   166 a.a.
NCBI ID   WP_028487534.1    Uniprot ID   -
Organism   Thiothrix lacustris strain MK1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 243714..254214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF98_RS01095 (RCF98_01095) - 244336..245157 (+) 822 WP_028487530.1 SHOCT domain-containing protein -
  RCF98_RS01100 (RCF98_01100) - 245172..245732 (-) 561 WP_028487531.1 protoglobin domain-containing protein -
  RCF98_RS01105 (RCF98_01105) dbpA 245927..247303 (+) 1377 WP_028487532.1 ATP-dependent RNA helicase DbpA -
  RCF98_RS01110 (RCF98_01110) - 247316..248680 (+) 1365 WP_308895577.1 MFS transporter -
  RCF98_RS01115 (RCF98_01115) ssb 248714..249214 (+) 501 WP_028487534.1 single-stranded DNA-binding protein Machinery gene
  RCF98_RS01120 (RCF98_01120) - 249443..250159 (-) 717 WP_028487535.1 hypothetical protein -
  RCF98_RS01125 (RCF98_01125) radC 250266..250937 (-) 672 WP_308394022.1 DNA repair protein RadC -
  RCF98_RS01130 (RCF98_01130) coaBC 250990..252195 (+) 1206 WP_308895581.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  RCF98_RS01135 (RCF98_01135) dut 252209..252664 (+) 456 WP_028487538.1 dUTP diphosphatase -
  RCF98_RS01140 (RCF98_01140) - 252668..254068 (+) 1401 WP_308895584.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17856.70 Da        Isoelectric Point: 6.2422

>NTDB_id=872541 RCF98_RS01115 WP_028487534.1 248714..249214(+) (ssb) [Thiothrix lacustris strain MK1]
MARGINKVILVGTVGKDPEMKYMPSGDAMANISVATNDTWKDKNTGEKKEATEWHRVVFFKQLADIVGKYVRKGQQIYIE
GSLKTRSWEKDGQKHYSTEIVASDMQMLGGRPGGGMESGNYDNAPAPRSNQGNSGGGYSGGSAPASSGGGGNNSNHFEDF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=872541 RCF98_RS01115 WP_028487534.1 248714..249214(+) (ssb) [Thiothrix lacustris strain MK1]
ATGGCACGAGGTATCAACAAAGTAATTCTGGTCGGCACGGTCGGTAAAGACCCTGAAATGAAATACATGCCCAGTGGTGA
CGCGATGGCTAATATCAGCGTCGCCACCAATGACACGTGGAAAGACAAAAATACCGGCGAGAAAAAAGAAGCTACCGAAT
GGCATCGCGTTGTCTTTTTCAAACAATTAGCCGATATTGTCGGCAAATACGTGCGTAAAGGTCAGCAGATATACATTGAA
GGCAGCCTGAAAACCCGTTCATGGGAAAAAGACGGTCAAAAGCACTACTCCACTGAAATCGTCGCCTCTGACATGCAAAT
GCTGGGCGGTCGTCCCGGTGGCGGTATGGAATCAGGTAATTACGACAATGCCCCTGCGCCACGTAGCAATCAAGGCAATT
CAGGTGGTGGTTACTCAGGTGGCAGCGCACCGGCATCGAGTGGTGGTGGCGGCAACAACTCCAATCACTTTGAAGACTTC
GATGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.721

100

0.536
  ssb Glaesserella parasuis strain SC1401

46.154

100

0.506
  ssb Neisseria meningitidis MC58

41.618

100

0.434
  ssb Neisseria gonorrhoeae MS11

40.805

100

0.428