Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RCG00_RS17510 Genome accession   NZ_CP133217
Coordinates   3365521..3366018 (+) Length   165 a.a.
NCBI ID   WP_308136547.1    Uniprot ID   -
Organism   Thiothrix subterranea strain DNT52     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3360521..3371018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG00_RS17495 (RCG00_17495) pckA 3360964..3362577 (+) 1614 WP_308136550.1 phosphoenolpyruvate carboxykinase (ATP) -
  RCG00_RS17500 (RCG00_17500) dbpA 3362671..3364047 (+) 1377 WP_308136549.1 ATP-dependent RNA helicase DbpA -
  RCG00_RS17505 (RCG00_17505) - 3364130..3365488 (+) 1359 WP_308136548.1 MFS transporter -
  RCG00_RS17510 (RCG00_17510) ssb 3365521..3366018 (+) 498 WP_308136547.1 single-stranded DNA-binding protein Machinery gene
  RCG00_RS17515 (RCG00_17515) - 3366247..3366960 (-) 714 WP_202717688.1 hypothetical protein -
  RCG00_RS17520 (RCG00_17520) radC 3366998..3367669 (-) 672 WP_202717689.1 DNA repair protein RadC -
  RCG00_RS17525 (RCG00_17525) coaBC 3367722..3368945 (+) 1224 WP_308136546.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  RCG00_RS17530 (RCG00_17530) dut 3368932..3369387 (+) 456 WP_308136545.1 dUTP diphosphatase -
  RCG00_RS17535 (RCG00_17535) - 3369391..3370791 (+) 1401 WP_308136544.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17687.46 Da        Isoelectric Point: 6.2444

>NTDB_id=872534 RCG00_RS17510 WP_308136547.1 3365521..3366018(+) (ssb) [Thiothrix subterranea strain DNT52]
MANGINKVILVGTVGRDPEMKYMPSGDAIANISVATSESWKDKNTGEKKEATEWHNVTFYRGLAKVVGDYVRKGQLLYVE
GSLKTRSWEKDGQKHYRTEVNATDMKMLGGRPGGGMGSGNYDDSSASPAQRSSNHGGGYGGGAPSAPADNASSRGFEDFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=872534 RCG00_RS17510 WP_308136547.1 3365521..3366018(+) (ssb) [Thiothrix subterranea strain DNT52]
ATGGCAAATGGTATCAACAAAGTCATTCTGGTCGGCACGGTGGGCAGAGACCCTGAGATGAAATACATGCCCAGCGGTGA
CGCAATCGCCAATATCAGTGTCGCCACCAGTGAATCATGGAAAGACAAAAATACCGGCGAGAAAAAAGAAGCCACTGAAT
GGCACAACGTGACTTTTTACCGAGGCTTAGCCAAAGTCGTTGGTGATTATGTTCGCAAAGGCCAATTGCTTTACGTCGAA
GGCAGCCTAAAAACCCGTTCGTGGGAAAAAGATGGGCAAAAACACTACCGCACCGAAGTGAACGCCACCGATATGAAAAT
GCTGGGCGGGCGTCCCGGTGGCGGCATGGGTTCGGGTAATTACGACGACTCATCCGCTTCCCCTGCGCAACGCAGCAGCA
ATCATGGCGGTGGTTACGGCGGCGGTGCGCCATCTGCTCCGGCGGACAATGCATCCAGCCGTGGCTTTGAAGACTTTGAT
GACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.159

100

0.503
  ssb Glaesserella parasuis strain SC1401

46.067

100

0.497
  ssb Neisseria meningitidis MC58

45.087

100

0.473
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.473