Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RCF95_RS22320 Genome accession   NZ_CP133197
Coordinates   3818906..3819403 (+) Length   165 a.a.
NCBI ID   WP_308136547.1    Uniprot ID   -
Organism   Thiothrix subterranea strain DNT53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3813906..3824403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF95_RS22305 pckA 3814442..3815962 (+) 1521 Protein_4390 phosphoenolpyruvate carboxykinase (ATP) -
  RCF95_RS22310 dbpA 3816056..3817432 (+) 1377 WP_308136549.1 ATP-dependent RNA helicase DbpA -
  RCF95_RS22315 - 3817515..3818873 (+) 1359 WP_308136548.1 MFS transporter -
  RCF95_RS22320 ssb 3818906..3819403 (+) 498 WP_308136547.1 single-stranded DNA-binding protein Machinery gene
  RCF95_RS22325 - 3819632..3820345 (-) 714 WP_202717688.1 hypothetical protein -
  RCF95_RS22330 radC 3820383..3821054 (-) 672 WP_202717689.1 DNA repair protein RadC -
  RCF95_RS22335 coaBC 3821107..3822330 (+) 1224 WP_308136546.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  RCF95_RS22340 dut 3822317..3822772 (+) 456 WP_308136545.1 dUTP diphosphatase -
  RCF95_RS22345 - 3822776..3823990 (+) 1215 WP_308873742.1 phosphomannomutase/phosphoglucomutase -
  RCF95_RS22350 - 3823945..3824175 (+) 231 WP_308873743.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17687.46 Da        Isoelectric Point: 6.2444

>NTDB_id=872432 RCF95_RS22320 WP_308136547.1 3818906..3819403(+) (ssb) [Thiothrix subterranea strain DNT53]
MANGINKVILVGTVGRDPEMKYMPSGDAIANISVATSESWKDKNTGEKKEATEWHNVTFYRGLAKVVGDYVRKGQLLYVE
GSLKTRSWEKDGQKHYRTEVNATDMKMLGGRPGGGMGSGNYDDSSASPAQRSSNHGGGYGGGAPSAPADNASSRGFEDFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=872432 RCF95_RS22320 WP_308136547.1 3818906..3819403(+) (ssb) [Thiothrix subterranea strain DNT53]
ATGGCAAATGGTATCAACAAAGTCATTCTGGTCGGCACGGTGGGCAGAGACCCTGAGATGAAATACATGCCCAGCGGTGA
CGCAATCGCCAATATCAGTGTCGCCACCAGTGAATCATGGAAAGACAAAAATACCGGCGAGAAAAAAGAAGCCACTGAAT
GGCACAACGTGACTTTTTACCGAGGCTTAGCCAAAGTCGTTGGTGATTATGTTCGCAAAGGCCAATTGCTTTACGTCGAA
GGCAGCCTAAAAACCCGTTCGTGGGAAAAAGATGGGCAAAAACACTACCGCACCGAAGTGAACGCCACCGATATGAAAAT
GCTGGGCGGGCGTCCCGGTGGCGGCATGGGTTCGGGTAATTACGACGACTCATCCGCTTCCCCTGCGCAACGCAGCAGCA
ATCATGGCGGTGGTTACGGCGGCGGTGCGCCATCTGCTCCGGCGGACAATGCATCCAGCCGTGGCTTTGAAGACTTTGAT
GACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.159

100

0.503
  ssb Glaesserella parasuis strain SC1401

46.067

100

0.497
  ssb Neisseria meningitidis MC58

45.087

100

0.473
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.473