Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAM80_RS14025 Genome accession   NZ_CP133165
Coordinates   3024609..3025124 (-) Length   171 a.a.
NCBI ID   WP_416427112.1    Uniprot ID   -
Organism   Pseudomonas sp. App30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3019609..3030124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM80_RS14000 (RAM80_13975) - 3020393..3020908 (+) 516 WP_416427107.1 DUF3299 domain-containing protein -
  RAM80_RS14005 (RAM80_13980) - 3021014..3021712 (+) 699 WP_416427108.1 OmpW/AlkL family protein -
  RAM80_RS14010 (RAM80_13985) - 3021832..3022761 (-) 930 WP_416427109.1 NAD-dependent epimerase/dehydratase family protein -
  RAM80_RS14015 (RAM80_13990) - 3022754..3023638 (-) 885 WP_416427110.1 sugar nucleotide-binding protein -
  RAM80_RS14020 (RAM80_13995) - 3023890..3024444 (+) 555 WP_416427111.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  RAM80_RS14025 (RAM80_14000) ssb 3024609..3025124 (-) 516 WP_416427112.1 single-stranded DNA-binding protein Machinery gene
  RAM80_RS14030 (RAM80_14005) - 3025134..3026528 (-) 1395 WP_416427113.1 MFS transporter -
  RAM80_RS14035 (RAM80_14010) uvrA 3026707..3029541 (+) 2835 WP_416427114.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18989.09 Da        Isoelectric Point: 5.9314

>NTDB_id=872251 RAM80_RS14025 WP_416427112.1 3024609..3025124(-) (ssb) [Pseudomonas sp. App30]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQQGDQGQGGNNYQQSAPRQQAPRPQQAAPQQSRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=872251 RAM80_RS14025 WP_416427112.1 3024609..3025124(-) (ssb) [Pseudomonas sp. App30]
ATGGCCCGTGGGGTTAACAAAGTCATTTTGGTCGGTACTTGCGGTCAGGATCCTGAAGTCCGCTACCTGCCCAACGGCAA
CGCTGTCACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGAGCGGCCAGAAGGTCGAGCGCACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAACAGGGCGACCAGGGCCAGGGCGGCAACAACTACCAGCAGTCGGCCCCGCGCC
AGCAGGCTCCACGTCCTCAGCAGGCCGCGCCACAACAGTCGCGCCCAGCGCCGCAACAGGCTGCCCCGCAACCTGCTGCT
GACTTCGACAGCTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.983

100

0.596
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.515
  ssb Neisseria meningitidis MC58

48.315

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.491