Detailed information NTG0872249

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RAM80_RS13050
• Genome accession: NZ_CP133165
• Coordinates: 2812619..2813959 (+)
• Length: 446 a.a.
• NCBI ID: WP_416426947.1
• Uniprot ID: -
• Organism: Pseudomonas sp. App30
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2807619..2818959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAM80_RS13025 (RAM80_13005)	pgeF	2807648..2808388 (-)	741	WP_416426942.1	peptidoglycan editing factor PgeF	-
RAM80_RS13030 (RAM80_13010)	rluD	2808385..2809347 (-)	963	WP_416426943.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
RAM80_RS13035 (RAM80_13015)	-	2809497..2810522 (+)	1026	WP_416426944.1	outer membrane protein assembly factor BamD	-
RAM80_RS13040 (RAM80_13020)	-	2810801..2811034 (+)	234	WP_416426945.1	PP0621 family protein	-
RAM80_RS13045 (RAM80_13025)	pilS	2811024..2812616 (+)	1593	WP_416426946.1	sensor histidine kinase	Regulator
RAM80_RS13050 (RAM80_13030)	pilR	2812619..2813959 (+)	1341	WP_416426947.1	sigma-54-dependent transcriptional regulator	Regulator
RAM80_RS13055 (RAM80_13035)	thiO	2814105..2815208 (-)	1104	WP_416426948.1	glycine oxidase ThiO	-
RAM80_RS13060 (RAM80_13040)	-	2815234..2815638 (-)	405	WP_416426949.1	type IV pilin protein	-
RAM80_RS13065 (RAM80_13045)	-	2815651..2818770 (-)	3120	WP_416426950.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49692.17 Da
• Isoelectric Point: 6.3867

>NTDB_id=872249 RAM80_RS13050 WP_416426947.1 2812619..2813959(+) (pilR) [Pseudomonas sp. App30]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGTGLELVQHIQQRFPQLPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLARLRELVASALRLQGPAGSEQSIDDRLLGDSPPMLAMRKQIGRLARSQAPV
YISGESGSGKELVARLIHEQGPRAELPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQASNGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGGQSEVVVDVRILCATHKDLNAEVAAGRFRQDLYYRLNVIELRVPSLRERREDIALLATR
VLKRLAHGSGLPPAQLSPAALETLKGYRFPGNVRELENMLERAYTLCENERIEPSDLRLSESAPTTEGGLPDLTNVDNLE
DFLENIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=872249 RAM80_RS13050 WP_416426947.1 2812619..2813959(+) (pilR) [Pseudomonas sp. App30]
ATGAGCCAACGGCAAAAGATCCTGATCGTCGACGATGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGCCGGAT
GAAACTCGACACGCGCAGCGCGCGCAACGTCAAGGAAGCCCGCGAGCTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCACCGGCCTTGAGCTGGTGCAACATATCCAGCAACGCTTTCCCCAGCTGCCGGTGGCG
ATGATCACCGCCTATGGCAGCCTCGACACCGCCATCAACGCCCTCAAGGCCGGTGCCTTCGATTTCCTGACCAAGCCCGT
GGACCTGGCGCGCCTGCGCGAGCTGGTGGCCAGCGCCCTGCGCCTGCAAGGCCCGGCCGGCAGCGAGCAGAGCATCGACG
ACCGCCTGCTGGGCGACTCGCCACCGATGCTGGCCATGCGCAAGCAGATCGGCCGGCTGGCGCGCAGCCAGGCGCCGGTG
TACATCAGTGGCGAGTCGGGCAGCGGCAAGGAGCTGGTGGCGCGGCTGATCCATGAGCAAGGCCCGCGCGCCGAACTGCC
GTTCGTGCCGGTGAACTGCGGCGCCATTCCCTCGGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCAAAGGCAGCTTTA
CCGGCGCCGTGGAAGACAAGCCCGGACTGTTCCAGGCCTCCAACGGCGGCACGCTGTTCCTCGACGAGGTCGCCGACCTG
CCGCTGGCCATGCAGGTGAAACTGTTGCGTGCCATCCAGGAGAAGGCGGTGCGCAGCATCGGCGGCCAGAGCGAGGTGGT
GGTGGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTGAACGCCGAAGTGGCAGCCGGGCGTTTTCGCCAGGACCTCT
ACTACCGCCTCAACGTCATCGAACTGCGCGTGCCTTCCTTGCGCGAACGCCGCGAAGACATCGCCCTGCTGGCCACTCGC
GTGCTCAAGCGCCTGGCCCACGGCAGCGGCCTGCCCCCGGCGCAACTGAGCCCGGCGGCGCTGGAAACCCTGAAGGGCTA
CCGTTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAACGCGCCTACACCCTGTGCGAGAACGAGCGTATCGAGC
CCAGCGACCTGCGCCTGAGCGAATCGGCCCCGACCACCGAAGGCGGCCTGCCCGACCTGACCAACGTCGACAACCTGGAA
GATTTCCTCGAGAACATCGAGCGCAAGCTGATCCTGCAAGCCCTGGAAGAAACCAGGTGGAACCGCACGGCAGCGGCGCA
ACGGCTGAGCCTGTCGTTCCGGTCGATGCGTTATCGGTTGAAGAAGCTGGGCCTGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-443)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	82.167	99.327	0.816
pilR	Acinetobacter baumannii strain A118	49.028	100	0.509
luxO	Vibrio cholerae strain A1552	37.923	99.327	0.377