Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   Q9R17_RS04365 Genome accession   NZ_CP133160
Coordinates   984441..985499 (-) Length   352 a.a.
NCBI ID   WP_343238779.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 24(2023)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 979441..990499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9R17_RS04345 (Q9R17_04345) - 980323..982305 (-) 1983 WP_308157222.1 type IV pilus secretin PilQ family protein -
  Q9R17_RS04350 (Q9R17_04350) - 982326..982835 (-) 510 WP_308158274.1 pilus assembly protein PilP -
  Q9R17_RS04355 (Q9R17_04355) pilO 982853..983557 (-) 705 WP_308157223.1 type 4a pilus biogenesis protein PilO -
  Q9R17_RS04360 (Q9R17_04360) - 983554..984441 (-) 888 WP_308157224.1 PilN domain-containing protein -
  Q9R17_RS04365 (Q9R17_04365) pilM 984441..985499 (-) 1059 WP_343238779.1 pilus assembly protein PilM Machinery gene
  Q9R17_RS04370 (Q9R17_04370) - 985719..988145 (+) 2427 WP_308157226.1 penicillin-binding protein 1A -
  Q9R17_RS04375 (Q9R17_04375) - 988385..989029 (+) 645 WP_308157227.1 hypothetical protein -
  Q9R17_RS04380 (Q9R17_04380) - 989057..989890 (-) 834 WP_308157228.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37600.21 Da        Isoelectric Point: 4.3214

>NTDB_id=872149 Q9R17_RS04365 WP_343238779.1 984441..985499(-) (pilM) [Stenotrophomonas sp. 24(2023)]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALNRAGSKAKLAAAA
VAGSAVITKVIPMPADLDEDDMEAQVELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAIENAFGLVASDLQVASDGVVALVDIGATMTTLIVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVQAQALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=872149 Q9R17_RS04365 WP_343238779.1 984441..985499(-) (pilM) [Stenotrophomonas sp. 24(2023)]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTCATCGGCGTCGACATCAGTTCGACTGCGGTCAAGCTCCTGCAGCTGTC
CCGCAGTGGCAACCGTTTCCGCGTGGAACATTACGCCGTGGAACCGTTGCCGCCCAATGCAGTGGTGGAAAAGAACATCG
TTGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGTTGAACCGTGCCGGCAGCAAGGCCAAGCTGGCCGCGGCCGCC
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGGACGACATGGAAGCCCAGGTCGA
GCTCGAAGCGGTCAACTACATTCCCTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCCGCATCGCGGTCTGAAAACGTCGAACTGCGCCAGTCCGCGCTGGAACTGGGC
GGGCTGACCGCCAAGGTCATGGACGTGGAAGCCTTCGCGATCGAGAACGCCTTCGGCCTGGTGGCCAGCGACCTGCAGGT
CGCCAGCGATGGCGTGGTGGCGCTGGTGGACATCGGTGCTACCATGACCACCCTGATCGTGCTGCGCGGTGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTATGGCCTGAGCTATGAGGAA
GCAGGCCTGGCCAAGCGCCAGGGCGGGTTGCCGGAAAGCTACGAGATGGAAGTGCTCGAGCCGTTCAAGGAAGCCACCGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAATTCAACCGCGTCGACCACATCGTGCTGGCCGGCG
GCTGTGCCGCGCTGGGGGGGCTGCCGGAAATGGTCGAGGAGCAGCTGGGCGTGCCGACCGTGGTCGCCAATCCGCTGGCG
CAGATGACCCTCGGGCCGAAAGTACAGGCGCAGGCGCTGGCCCAGGATGCGCCGGCACTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

46.724

99.716

0.466