Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RB548_RS07815 Genome accession   NZ_CP133148
Coordinates   1619822..1620346 (-) Length   174 a.a.
NCBI ID   WP_331374370.1    Uniprot ID   -
Organism   Sinorhizobium chiapasense strain ITTG S70     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1614822..1625346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB548_RS07800 (RB548_07800) - 1614917..1615810 (+) 894 WP_331374367.1 LysR family transcriptional regulator -
  RB548_RS07805 (RB548_07805) gyrA 1615882..1618662 (-) 2781 WP_331374368.1 DNA gyrase subunit A -
  RB548_RS07810 (RB548_07810) - 1618993..1619622 (+) 630 WP_331374369.1 MarC family protein -
  RB548_RS07815 (RB548_07815) ssb 1619822..1620346 (-) 525 WP_331374370.1 single-stranded DNA-binding protein Machinery gene
  RB548_RS07820 (RB548_07820) uvrA 1620630..1623551 (+) 2922 WP_331374913.1 excinuclease ABC subunit UvrA -
  RB548_RS07825 (RB548_07825) - 1623742..1624545 (+) 804 WP_331374371.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18865.56 Da        Isoelectric Point: 5.3397

>NTDB_id=872139 RB548_RS07815 WP_331374370.1 1619822..1620346(-) (ssb) [Sinorhizobium chiapasense strain ITTG S70]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFSEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQNGNDRYSTEIVLQGFNSTLTMLDGRGEGGGSGVSRGGGNDYGGGYEDYDQPRQSSGGGRSGGGQGGQS
GGNFSRDLDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=872139 RB548_RS07815 WP_331374370.1 1619822..1620346(-) (ssb) [Sinorhizobium chiapasense strain ITTG S70]
ATGGCTGGTAGCGTCAACAAGGTGATCTTGATCGGAAATGTCGGGGCCGACCCTGAAATCCGGCGCACGCAGGATGGCCG
CCCGATCGCCAACCTGCGCATCGCCACCTCGGAAACGTGGCGCGACCGCAACAGCGGCGAGCGTCGCGAGAAGACCGAAT
GGCACACGGTCGTCGTCTTCAGCGAGGGCCTCTGCAAGGTGGTCGAGCAATATGTGAAGAAGGGCGCGAAGCTCTATATC
GAGGGCCAGTTGCAGACCCGCAAGTGGCAGGACCAGAATGGCAACGACCGCTATTCGACCGAAATCGTACTGCAGGGCTT
CAACTCGACGCTGACGATGCTCGACGGTCGCGGCGAGGGCGGCGGCTCTGGTGTCAGCCGTGGCGGCGGCAATGACTACG
GCGGCGGCTATGAGGATTACGATCAGCCGCGCCAGTCTTCAGGCGGCGGACGCTCCGGCGGTGGTCAAGGCGGCCAGAGC
GGCGGCAACTTCTCGCGTGATCTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.149

100

0.511
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.494
  ssb Neisseria meningitidis MC58

39.56

100

0.414
  ssb Neisseria gonorrhoeae MS11

39.011

100

0.408