Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RBU55_RS27980 Genome accession   NZ_CP133110
Coordinates   6190658..6191170 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6185658..6196170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU55_RS27960 (RBU55_27960) clsB 6186382..6187683 (+) 1302 WP_307948920.1 cardiolipin synthase ClsB -
  RBU55_RS27965 (RBU55_27965) - 6187670..6188662 (+) 993 WP_307948922.1 lysylphosphatidylglycerol synthase domain-containing protein -
  RBU55_RS27970 (RBU55_27970) - 6188866..6189873 (-) 1008 WP_226303370.1 GlxA family transcriptional regulator -
  RBU55_RS27975 (RBU55_27975) - 6189977..6190531 (+) 555 WP_226303369.1 cysteine hydrolase family protein -
  RBU55_RS27980 (RBU55_27980) ssb 6190658..6191170 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  RBU55_RS27985 (RBU55_27985) - 6191180..6192574 (-) 1395 WP_053281128.1 MFS transporter -
  RBU55_RS27990 (RBU55_27990) uvrA 6192755..6195589 (+) 2835 WP_025807824.1 excinuclease ABC subunit UvrA -
  RBU55_RS27995 (RBU55_27995) bfr 6195683..6196147 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=871920 RBU55_RS27980 WP_009045846.1 6190658..6191170(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=871920 RBU55_RS27980 WP_009045846.1 6190658..6191170(-) (ssb) [Pseudomonas chlororaphis subsp. aurantiaca strain IRHB3]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACTGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAGCCTTCGCAGGCGCCACAGCGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5