Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | RBI06_RS25520 | Genome accession | NZ_CP133093 |
| Coordinates | 5494092..5495429 (+) | Length | 445 a.a. |
| NCBI ID | WP_003094694.1 | Uniprot ID | A0A0H2ZG94 |
| Organism | Pseudomonas aeruginosa strain 002 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 5456553..5503599 | 5494092..5495429 | within | 0 |
Gene organization within MGE regions
Location: 5456553..5503599
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RBI06_RS25315 (RBI06_25315) | - | 5456553..5456846 (-) | 294 | WP_015503624.1 | IS3 family transposase | - |
| RBI06_RS25320 (RBI06_25320) | - | 5456981..5457658 (+) | 678 | WP_015503625.1 | thermostable hemolysin | - |
| RBI06_RS25325 (RBI06_25325) | - | 5457648..5459114 (+) | 1467 | WP_015503626.1 | AMP-binding protein | - |
| RBI06_RS25330 (RBI06_25330) | - | 5459123..5459803 (+) | 681 | WP_015503627.1 | TenA family transcriptional regulator | - |
| RBI06_RS25335 (RBI06_25335) | - | 5459790..5460596 (+) | 807 | WP_015503628.1 | SDR family oxidoreductase | - |
| RBI06_RS25340 (RBI06_25340) | - | 5460593..5461234 (+) | 642 | WP_015503629.1 | tetratricopeptide repeat protein | - |
| RBI06_RS25345 (RBI06_25345) | - | 5461237..5461899 (+) | 663 | WP_015503630.1 | response regulator transcription factor | - |
| RBI06_RS25350 (RBI06_25350) | - | 5461896..5463263 (+) | 1368 | WP_023111833.1 | ATP-binding protein | - |
| RBI06_RS25355 (RBI06_25355) | - | 5463659..5464468 (-) | 810 | WP_015503632.1 | diheme cytochrome c | - |
| RBI06_RS25360 (RBI06_25360) | - | 5464483..5464896 (-) | 414 | WP_015503633.1 | DUF1924 domain-containing protein | - |
| RBI06_RS25365 (RBI06_25365) | - | 5465035..5466546 (+) | 1512 | WP_023980673.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
| RBI06_RS25370 (RBI06_25370) | - | 5466761..5466965 (-) | 205 | Protein_5023 | IS5/IS1182 family transposase | - |
| RBI06_RS25375 (RBI06_25375) | - | 5467049..5468175 (+) | 1127 | WP_094867530.1 | IS3 family transposase | - |
| RBI06_RS25380 (RBI06_25380) | - | 5468578..5469084 (+) | 507 | WP_031277313.1 | chalcone isomerase family protein | - |
| RBI06_RS25385 (RBI06_25385) | - | 5469081..5469635 (+) | 555 | WP_015503637.1 | DUF3833 domain-containing protein | - |
| RBI06_RS25390 (RBI06_25390) | - | 5469632..5469937 (+) | 306 | WP_003123379.1 | DUF6482 family protein | - |
| RBI06_RS25395 (RBI06_25395) | - | 5469934..5471475 (+) | 1542 | WP_015503638.1 | cryptochrome/photolyase family protein | - |
| RBI06_RS25400 (RBI06_25400) | - | 5471472..5471627 (+) | 156 | WP_015503639.1 | DUF2256 domain-containing protein | - |
| RBI06_RS25405 (RBI06_25405) | - | 5471592..5472083 (-) | 492 | WP_023111836.1 | DUF2878 domain-containing protein | - |
| RBI06_RS25410 (RBI06_25410) | - | 5472083..5473351 (-) | 1269 | WP_015503641.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| RBI06_RS25415 (RBI06_25415) | - | 5473323..5474138 (-) | 816 | WP_015503642.1 | DUF1365 domain-containing protein | - |
| RBI06_RS25420 (RBI06_25420) | - | 5474135..5475382 (-) | 1248 | WP_023980440.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| RBI06_RS25425 (RBI06_25425) | - | 5475386..5476141 (-) | 756 | WP_003123384.1 | SDR family oxidoreductase | - |
| RBI06_RS25430 (RBI06_25430) | - | 5476138..5476560 (-) | 423 | WP_003123385.1 | nuclear transport factor 2 family protein | - |
| RBI06_RS25435 (RBI06_25435) | - | 5476657..5477127 (-) | 471 | WP_003123386.1 | PAS domain-containing protein | - |
| RBI06_RS25440 (RBI06_25440) | - | 5477255..5478148 (+) | 894 | WP_003123387.1 | MerR family transcriptional regulator | - |
| RBI06_RS25445 (RBI06_25445) | - | 5478343..5479713 (+) | 1371 | WP_023082828.1 | IS1182 family transposase | - |
| RBI06_RS25450 (RBI06_25450) | - | 5479964..5481475 (-) | 1512 | WP_033983075.1 | IS66 family transposase | - |
| RBI06_RS25455 (RBI06_25455) | tnpB | 5481539..5481874 (-) | 336 | WP_023980255.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| RBI06_RS25460 (RBI06_25460) | - | 5481871..5482212 (-) | 342 | WP_023980254.1 | transposase | - |
| RBI06_RS25465 (RBI06_25465) | mobH | 5482463..5484385 (+) | 1923 | WP_023111839.1 | MobH family relaxase | - |
| RBI06_RS25470 (RBI06_25470) | xerC | 5484382..5485662 (+) | 1281 | WP_015503393.1 | tyrosine recombinase XerC | - |
| RBI06_RS25490 (RBI06_25490) | clpB | 5486515..5489079 (-) | 2565 | WP_003094682.1 | ATP-dependent chaperone ClpB | - |
| RBI06_RS25495 (RBI06_25495) | pgeF | 5489235..5489963 (-) | 729 | WP_003094684.1 | peptidoglycan editing factor PgeF | - |
| RBI06_RS25500 (RBI06_25500) | rluD | 5489960..5490922 (-) | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| RBI06_RS25505 (RBI06_25505) | - | 5491068..5492093 (+) | 1026 | WP_003102590.1 | outer membrane protein assembly factor BamD | - |
| RBI06_RS25510 (RBI06_25510) | - | 5492250..5492495 (+) | 246 | WP_003102591.1 | PP0621 family protein | - |
| RBI06_RS25515 (RBI06_25515) | pilS | 5492485..5494077 (+) | 1593 | WP_033989041.1 | two-component system sensor histidine kinase PilS | Regulator |
| RBI06_RS25520 (RBI06_25520) | pilR | 5494092..5495429 (+) | 1338 | WP_003094694.1 | two-component system response regulator PilR | Regulator |
| RBI06_RS25525 (RBI06_25525) | thiO | 5495475..5496569 (-) | 1095 | WP_003141551.1 | glycine oxidase ThiO | - |
| RBI06_RS25530 (RBI06_25530) | - | 5496709..5497209 (+) | 501 | WP_016562346.1 | GspH/FimT family pseudopilin | - |
| RBI06_RS25535 (RBI06_25535) | - | 5497332..5497820 (+) | 489 | WP_003141552.1 | GspH/FimT family pseudopilin | - |
| RBI06_RS25540 (RBI06_25540) | pilV | 5497830..5498354 (+) | 525 | WP_003116261.1 | type IV pilus modification protein PilV | Machinery gene |
| RBI06_RS25545 (RBI06_25545) | - | 5498363..5499178 (+) | 816 | WP_016254061.1 | PilW family protein | - |
| RBI06_RS25550 (RBI06_25550) | - | 5499175..5499780 (+) | 606 | WP_003116263.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| RBI06_RS25555 (RBI06_25555) | - | 5499794..5503270 (+) | 3477 | WP_023100239.1 | pilus assembly protein | - |
| RBI06_RS25560 (RBI06_25560) | - | 5503273..5503599 (+) | 327 | WP_016254060.1 | PilY2 family type 4a fimbrial biogenesis protein | - |
Sequence
Protein
Download Length: 445 a.a. Molecular weight: 49737.06 Da Isoelectric Point: 5.8654
>NTDB_id=871853 RBI06_RS25520 WP_003094694.1 5494092..5495429(+) (pilR) [Pseudomonas aeruginosa strain 002]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID
Nucleotide
Download Length: 1338 bp
>NTDB_id=871853 RBI06_RS25520 WP_003094694.1 5494092..5495429(+) (pilR) [Pseudomonas aeruginosa strain 002]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCACCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCACTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCACCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCACTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
100 |
100 |
1 |
| pilR | Acinetobacter baumannii strain A118 |
51.198 |
100 |
0.528 |
| luxO | Vibrio cholerae strain A1552 |
38.17 |
100 |
0.384 |