Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RBH93_RS02545 | Genome accession | NZ_CP133079 |
| Coordinates | 527501..528088 (-) | Length | 195 a.a. |
| NCBI ID | WP_005340181.1 | Uniprot ID | A0A165S798 |
| Organism | Aeromonas veronii strain HS1906 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 484102..527284 | 527501..528088 | flank | 217 |
Gene organization within MGE regions
Location: 484102..528088
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RBH93_RS02330 (RBH93_02330) | - | 484102..484305 (+) | 204 | Protein_446 | IS1595 family transposase | - |
| RBH93_RS02335 (RBH93_02335) | - | 484341..486092 (-) | 1752 | Protein_447 | Tn3-like element TnAs1 family transposase | - |
| RBH93_RS02340 (RBH93_02340) | - | 486096..486488 (+) | 393 | WP_001351729.1 | cysteine hydrolase family protein | - |
| RBH93_RS02345 (RBH93_02345) | - | 486626..487510 (+) | 885 | WP_000058717.1 | DMT family transporter | - |
| RBH93_RS02350 (RBH93_02350) | tet(A) | 487542..488741 (-) | 1200 | WP_000804064.1 | tetracycline efflux MFS transporter Tet(A) | - |
| RBH93_RS02355 (RBH93_02355) | tetR(A) | 488847..489497 (+) | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| RBH93_RS02360 (RBH93_02360) | - | 489529..489771 (-) | 243 | WP_000844627.1 | transposase | - |
| RBH93_RS02365 (RBH93_02365) | - | 489829..492795 (-) | 2967 | WP_001138014.1 | Tn3-like element TnAs1 family transposase | - |
| RBH93_RS02370 (RBH93_02370) | - | 492799..493359 (-) | 561 | WP_001161490.1 | recombinase family protein | - |
| RBH93_RS02375 (RBH93_02375) | intI1 | 493696..494709 (-) | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| RBH93_RS02380 (RBH93_02380) | dfrA17 | 494867..495340 (+) | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| RBH93_RS02385 (RBH93_02385) | - | 495570..495917 (+) | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| RBH93_RS02390 (RBH93_02390) | sul1 | 495911..496750 (+) | 840 | WP_000259031.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | - |
| RBH93_RS02395 (RBH93_02395) | - | 496878..497075 (+) | 198 | Protein_459 | hypothetical protein | - |
| RBH93_RS02400 (RBH93_02400) | chrA | 497237..498442 (+) | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| RBH93_RS02405 (RBH93_02405) | - | 498453..498758 (+) | 306 | WP_000130000.1 | PadR family transcriptional regulator | - |
| RBH93_RS02415 (RBH93_02415) | - | 498985..499749 (+) | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| RBH93_RS02420 (RBH93_02420) | mphR(A) | 500242..500826 (-) | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| RBH93_RS02425 (RBH93_02425) | mrx(A) | 500826..502064 (-) | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| RBH93_RS02430 (RBH93_02430) | - | 502061..502966 (-) | 906 | WP_000219391.1 | Mph(A) family macrolide 2'-phosphotransferase | - |
| RBH93_RS02435 (RBH93_02435) | - | 503088..503792 (-) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| RBH93_RS02440 (RBH93_02440) | - | 503943..504758 (+) | 816 | WP_000018329.1 | aminoglycoside O-phosphotransferase APH(3')-Ia | - |
| RBH93_RS02445 (RBH93_02445) | - | 504948..505652 (-) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| RBH93_RS02450 (RBH93_02450) | - | 505717..506967 (-) | 1251 | Protein_469 | transposase | - |
| RBH93_RS02460 (RBH93_02460) | istB | 507395..508150 (-) | 756 | WP_000194037.1 | IS21-like element ISAs29 family helper ATPase IstB | - |
| RBH93_RS02465 (RBH93_02465) | istA | 508165..509706 (-) | 1542 | WP_111809685.1 | IS21-like element ISAs29 family transposase | - |
| RBH93_RS02470 (RBH93_02470) | - | 510327..511610 (+) | 1284 | WP_202803855.1 | hypothetical protein | - |
| RBH93_RS02475 (RBH93_02475) | - | 511610..512143 (+) | 534 | WP_010635899.1 | hypothetical protein | - |
| RBH93_RS02480 (RBH93_02480) | - | 512140..514188 (+) | 2049 | WP_010635900.1 | AAA family ATPase | - |
| RBH93_RS02485 (RBH93_02485) | - | 514257..516503 (+) | 2247 | WP_202803856.1 | hypothetical protein | - |
| RBH93_RS02490 (RBH93_02490) | - | 516792..517034 (+) | 243 | WP_010635901.1 | protein UmuC | - |
| RBH93_RS02495 (RBH93_02495) | - | 517381..518118 (+) | 738 | WP_010635902.1 | DUF4113 domain-containing protein | - |
| RBH93_RS02500 (RBH93_02500) | - | 518279..518485 (-) | 207 | WP_010635903.1 | helix-turn-helix domain-containing protein | - |
| RBH93_RS02505 (RBH93_02505) | - | 518603..519169 (+) | 567 | WP_010635904.1 | hypothetical protein | - |
| RBH93_RS02510 (RBH93_02510) | - | 519172..520548 (+) | 1377 | WP_042889247.1 | DEAD/DEAH box helicase | - |
| RBH93_RS02515 (RBH93_02515) | - | 520568..521281 (-) | 714 | Protein_481 | IS630-like element ISAhy2 family transposase | - |
| RBH93_RS02520 (RBH93_02520) | - | 521297..521860 (-) | 564 | Protein_482 | IS630-like element ISAhy2 family transposase | - |
| RBH93_RS02525 (RBH93_02525) | - | 522107..522367 (-) | 261 | WP_081250417.1 | hypothetical protein | - |
| RBH93_RS02530 (RBH93_02530) | - | 522519..524552 (-) | 2034 | WP_010635907.1 | integrase | - |
| RBH93_RS02535 (RBH93_02535) | - | 524545..526035 (-) | 1491 | WP_307896142.1 | site-specific integrase | - |
| RBH93_RS02540 (RBH93_02540) | - | 526094..527341 (-) | 1248 | WP_010635909.1 | site-specific integrase | - |
| RBH93_RS02545 (RBH93_02545) | ssb | 527501..528088 (-) | 588 | WP_005340181.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21583.11 Da Isoelectric Point: 5.9301
>NTDB_id=871660 RBH93_RS02545 WP_005340181.1 527501..528088(-) (ssb) [Aeromonas veronii strain HS1906]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
Nucleotide
Download Length: 588 bp
>NTDB_id=871660 RBH93_RS02545 WP_005340181.1 527501..528088(-) (ssb) [Aeromonas veronii strain HS1906]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACTTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTATCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAAGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAACCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCACAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTTTGA
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACTTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTATCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAAGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAACCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCACAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
69.347 |
100 |
0.708 |
| ssb | Glaesserella parasuis strain SC1401 |
53.886 |
98.974 |
0.533 |
| ssb | Neisseria meningitidis MC58 |
46.597 |
97.949 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
46.842 |
97.436 |
0.456 |