Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RBI12_RS01180 Genome accession   NZ_CP133054
Coordinates   262308..262895 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A774     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 257308..267895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI12_RS01155 (RBI12_01160) - 257384..258184 (-) 801 WP_017481793.1 SDR family oxidoreductase -
  RBI12_RS01160 (RBI12_01165) - 258288..258659 (-) 372 WP_017481792.1 MerR family transcriptional regulator -
  RBI12_RS01165 (RBI12_01170) tenA 258726..259400 (-) 675 WP_017481791.1 thiaminase II -
  RBI12_RS01170 (RBI12_01175) - 259663..260745 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  RBI12_RS01175 (RBI12_01180) yajR 260892..262256 (+) 1365 WP_005078603.1 MFS transporter -
  RBI12_RS01180 (RBI12_01185) ssb 262308..262895 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  RBI12_RS01185 (RBI12_01190) - 262936..263259 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  RBI12_RS01190 (RBI12_01195) - 263256..263951 (-) 696 WP_031945066.1 AzlC family ABC transporter permease -
  RBI12_RS01195 (RBI12_01200) ydcN 264020..264568 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  RBI12_RS01200 (RBI12_01205) - 264874..266316 (+) 1443 WP_017481789.1 amino acid permease -
  RBI12_RS01205 (RBI12_01210) - 266384..267883 (-) 1500 WP_025468470.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=871526 RBI12_RS01180 WP_005066890.1 262308..262895(+) (ssb) [Acinetobacter pittii strain A774]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=871526 RBI12_RS01180 WP_005066890.1 262308..262895(+) (ssb) [Acinetobacter pittii strain A774]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACGACAGAAATTCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGTAACCCTCAAGCGGGTGGTTTCGCGCCTAAAGCTCCGCAACAACCGGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385