Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RBI10_RS01000 Genome accession   NZ_CP133047
Coordinates   224842..225429 (+) Length   195 a.a.
NCBI ID   WP_005804461.1    Uniprot ID   A0A009RDI8
Organism   Acinetobacter pittii strain A1269     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 219842..230429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI10_RS00975 (RBI10_00980) - 220463..220816 (+) 354 WP_005066877.1 DUF1304 domain-containing protein -
  RBI10_RS00980 (RBI10_00985) glpM 220869..221210 (+) 342 WP_000263326.1 GlpM family protein -
  RBI10_RS00985 (RBI10_00990) tenA 221260..221934 (-) 675 WP_032057178.1 thiaminase II -
  RBI10_RS00990 (RBI10_00995) - 222197..223279 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  RBI10_RS00995 (RBI10_01000) yajR 223426..224790 (+) 1365 WP_005078603.1 MFS transporter -
  RBI10_RS01000 (RBI10_01005) ssb 224842..225429 (+) 588 WP_005804461.1 single-stranded DNA-binding protein Machinery gene
  RBI10_RS01005 (RBI10_01010) - 225471..225794 (-) 324 WP_069120237.1 AzlD domain-containing protein -
  RBI10_RS01010 (RBI10_01015) - 225791..226486 (-) 696 WP_069120235.1 AzlC family ABC transporter permease -
  RBI10_RS01015 (RBI10_01020) ydcN 226555..227103 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  RBI10_RS01020 (RBI10_01025) - 227409..228851 (+) 1443 WP_002117418.1 amino acid permease -
  RBI10_RS01025 (RBI10_01030) - 228918..230417 (-) 1500 WP_017402825.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21195.98 Da        Isoelectric Point: 6.4822

>NTDB_id=871430 RBI10_RS01000 WP_005804461.1 224842..225429(+) (ssb) [Acinetobacter pittii strain A1269]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=871430 RBI10_RS01000 WP_005804461.1 224842..225429(+) (ssb) [Acinetobacter pittii strain A1269]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCGGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RDI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39