Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHU41_RS21720 Genome accession   NZ_CP148401
Coordinates   4325443..4325979 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Z1323CEC0019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4320443..4330979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU41_RS21700 (WHU41_21700) soxR 4322171..4322635 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  WHU41_RS21705 (WHU41_21705) soxS 4322721..4323044 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WHU41_RS21710 (WHU41_21710) pdeC 4323047..4324633 (-) 1587 WP_000019527.1 c-di-GMP phosphodiesterase PdeC -
  WHU41_RS21715 (WHU41_21715) yjcB 4325063..4325344 (+) 282 WP_001341690.1 YjcB family protein -
  WHU41_RS21720 (WHU41_21720) ssb 4325443..4325979 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WHU41_RS21725 (WHU41_21725) uvrA 4326233..4329055 (+) 2823 WP_338927912.1 excinuclease ABC subunit UvrA Machinery gene
  WHU41_RS21730 (WHU41_21730) yjbR 4329090..4329446 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WHU41_RS21735 (WHU41_21735) yjbQ 4329450..4329866 (-) 417 WP_024237111.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WHU41_RS21740 (WHU41_21740) aphA 4329977..4330690 (-) 714 WP_024237112.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=871400 WHU41_RS21720 WP_000168305.1 4325443..4325979(-) (ssb) [Escherichia coli strain Z1323CEC0019]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=871400 WHU41_RS21720 WP_000168305.1 4325443..4325979(-) (ssb) [Escherichia coli strain Z1323CEC0019]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489