Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SHJJP9002_RS12415 Genome accession   NZ_CP133006
Coordinates   2569427..2569948 (-) Length   173 a.a.
NCBI ID   WP_046836916.1    Uniprot ID   A0A1S2MQH3
Organism   Staphylococcus casei strain SCK7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2564427..2574948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9002_RS12415 (SHJJP9002_002481) ssbA 2569427..2569948 (-) 522 WP_046836916.1 single-stranded DNA-binding protein Machinery gene
  SHJJP9002_RS12420 (SHJJP9002_002482) rpsF 2569967..2570272 (-) 306 WP_046836917.1 30S ribosomal protein S6 -
  SHJJP9002_RS12425 (SHJJP9002_002483) - 2570703..2571509 (+) 807 WP_341636594.1 GH25 family lysozyme -
  SHJJP9002_RS12430 (SHJJP9002_002484) ychF 2571659..2572756 (-) 1098 WP_069824670.1 redox-regulated ATPase YchF -
  SHJJP9002_RS12435 (SHJJP9002_002485) - 2572757..2572972 (-) 216 WP_046836920.1 DUF951 domain-containing protein -
  SHJJP9002_RS12440 (SHJJP9002_002486) - 2572993..2573877 (-) 885 WP_069824669.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19133.61 Da        Isoelectric Point: 4.9056

>NTDB_id=871317 SHJJP9002_RS12415 WP_046836916.1 2569427..2569948(-) (ssbA) [Staphylococcus casei strain SCK7]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNSQDYGQSFGGQQSGQNTSSYQNNNNNSSNNNAQSNNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=871317 SHJJP9002_RS12415 WP_046836916.1 2569427..2569948(-) (ssbA) [Staphylococcus casei strain SCK7]
ATGATAAATAGAGTTGTTTTAGTTGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACCTTAGCGGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATAAACTGTGTTGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATCAAAAGGTAGTTTGGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGACGTCGTATTTTTGTAACAGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGCCATGCTCAAGAAGGGAATAACAATTCTCAAGATTATGGACAAAGTTTTGGTGGTCAACAATCAGGTC
AAAATACGTCATCTTATCAAAACAATAACAATAATTCATCAAATAATAATGCTCAATCAAACAATCCATTTGCCAATGCA
AACGGACCGATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2MQH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.89

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

55.491

100

0.555
  ssb Glaesserella parasuis strain SC1401

34.375

100

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.584

0.37