Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHU48_RS20720 Genome accession   NZ_CP148382
Coordinates   4268467..4269003 (-) Length   178 a.a.
NCBI ID   WP_024223419.1    Uniprot ID   -
Organism   Escherichia coli strain Z1323HEC0016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4263467..4274003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU48_RS20700 (WHU48_20700) soxR 4265196..4265660 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  WHU48_RS20705 (WHU48_20705) soxS 4265746..4266069 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WHU48_RS20710 (WHU48_20710) pdeC 4266105..4267658 (-) 1554 WP_001327775.1 c-di-GMP phosphodiesterase PdeC -
  WHU48_RS20715 (WHU48_20715) yjcB 4268087..4268368 (+) 282 WP_001304710.1 YjcB family protein -
  WHU48_RS20720 (WHU48_20720) ssb 4268467..4269003 (-) 537 WP_024223419.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WHU48_RS20725 (WHU48_20725) uvrA 4269258..4272080 (+) 2823 WP_024223418.1 excinuclease ABC subunit UvrA Machinery gene
  WHU48_RS20730 (WHU48_20730) yjbR 4272115..4272471 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WHU48_RS20735 (WHU48_20735) yjbQ 4272475..4272891 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WHU48_RS20740 (WHU48_20740) aphA 4273002..4273715 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19005.02 Da        Isoelectric Point: 5.2358

>NTDB_id=871075 WHU48_RS20720 WP_024223419.1 4268467..4269003(-) (ssb) [Escherichia coli strain Z1323HEC0016]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQST
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=871075 WHU48_RS20720 WP_024223419.1 4268467..4269003(-) (ssb) [Escherichia coli strain Z1323HEC0016]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTACT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

47.514

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.483