Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHU33_RS16895 Genome accession   NZ_CP148374
Coordinates   3380155..3380691 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Z1323HEC0108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3375155..3385691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU33_RS16875 (WHU33_16875) aphA 3375444..3376157 (+) 714 WP_001307512.1 acid phosphatase AphA -
  WHU33_RS16880 (WHU33_16880) yjbQ 3376268..3376684 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WHU33_RS16885 (WHU33_16885) yjbR 3376688..3377044 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WHU33_RS16890 (WHU33_16890) uvrA 3377079..3379901 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  WHU33_RS16895 (WHU33_16895) ssb 3380155..3380691 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WHU33_RS16900 (WHU33_16900) yjcB 3380790..3381071 (-) 282 WP_001295689.1 YjcB family protein -
  WHU33_RS16905 (WHU33_16905) pdeC 3381501..3383087 (+) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  WHU33_RS16910 (WHU33_16910) soxS 3383090..3383413 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WHU33_RS16915 (WHU33_16915) soxR 3383499..3383963 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=870908 WHU33_RS16895 WP_000168305.1 3380155..3380691(+) (ssb) [Escherichia coli strain Z1323HEC0108]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=870908 WHU33_RS16895 WP_000168305.1 3380155..3380691(+) (ssb) [Escherichia coli strain Z1323HEC0108]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489