Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q5701_RS13960 Genome accession   NZ_CP132956
Coordinates   2802824..2803321 (-) Length   165 a.a.
NCBI ID   WP_306751584.1    Uniprot ID   -
Organism   Paracoccus sp. M09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2797824..2808321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5701_RS13935 - 2798436..2799401 (-) 966 WP_306751580.1 site-specific tyrosine recombinase XerD -
  Q5701_RS13940 - 2799398..2800855 (-) 1458 WP_306751581.1 hypothetical protein -
  Q5701_RS13945 - 2800852..2801022 (-) 171 WP_306751582.1 hypothetical protein -
  Q5701_RS13950 - 2801146..2801697 (+) 552 WP_373568554.1 shikimate kinase -
  Q5701_RS13955 aroB 2801694..2802803 (+) 1110 WP_306751583.1 3-dehydroquinate synthase -
  Q5701_RS13960 ssb 2802824..2803321 (-) 498 WP_306751584.1 single-stranded DNA-binding protein Machinery gene
  Q5701_RS13965 - 2803488..2804120 (+) 633 WP_306751585.1 lytic transglycosylase domain-containing protein -
  Q5701_RS13970 - 2804208..2805497 (-) 1290 WP_306751586.1 homoserine dehydrogenase -
  Q5701_RS13975 - 2805561..2806082 (-) 522 WP_306751587.1 hypothetical protein -
  Q5701_RS13980 - 2806084..2806899 (-) 816 WP_306751588.1 glycosyl transferase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17835.43 Da        Isoelectric Point: 5.8284

>NTDB_id=870867 Q5701_RS13960 WP_306751584.1 2802824..2803321(-) (ssb) [Paracoccus sp. M09]
MAGSVNKVILIGNLGADPEIRTFQNGGKIANLRIATSETWKDRNTGERKERTEWHTVVIHSEPLVRVAEQYLKKGSKIYV
EGQLETRKWQDQSGADRYSTEVALRPYRSELTMLEGRGGAGGGGSRDGGGYDDYDRGGSSSGSQGGGSQSGGGSSRSDYD
DEIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=870867 Q5701_RS13960 WP_306751584.1 2802824..2803321(-) (ssb) [Paracoccus sp. M09]
ATGGCAGGCAGCGTCAACAAGGTCATCCTGATCGGCAATCTGGGCGCCGACCCCGAAATCCGCACGTTTCAAAATGGCGG
CAAGATCGCGAACCTGCGCATCGCCACGTCCGAAACGTGGAAGGACCGCAACACGGGCGAGCGCAAGGAAAGGACCGAAT
GGCATACGGTCGTCATTCATTCCGAACCCCTGGTCCGCGTGGCCGAGCAGTATCTGAAGAAGGGCAGCAAGATCTATGTC
GAGGGGCAACTGGAAACCCGCAAATGGCAGGACCAGTCGGGCGCCGACCGTTATTCGACCGAGGTCGCGCTGCGCCCCTA
TCGCAGCGAACTGACGATGCTGGAAGGCCGGGGCGGTGCAGGTGGCGGCGGTAGCCGTGACGGGGGCGGCTATGACGATT
ACGACCGCGGCGGCTCGTCCTCGGGCAGCCAGGGCGGCGGCAGCCAGAGCGGTGGCGGCAGCAGCCGCAGCGATTACGAC
GACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.143

100

0.521
  ssb Glaesserella parasuis strain SC1401

44.624

100

0.503
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.418
  ssb Neisseria meningitidis MC58

37.989

100

0.412