Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RA292_RS20425 Genome accession   NZ_CP132912
Coordinates   3965390..3965908 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3960390..3970908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS20395 yyaJ 3960893..3962248 (+) 1356 WP_003243011.1 MFS transporter -
  RA292_RS20400 maa 3962282..3962836 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  RA292_RS20405 yyaH 3962854..3963234 (-) 381 WP_003244460.1 VOC family protein -
  RA292_RS20410 ccpB 3963290..3964225 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  RA292_RS20415 xth 3964284..3965042 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  RA292_RS20420 rpsR 3965107..3965346 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  RA292_RS20425 ssbA 3965390..3965908 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  RA292_RS20430 rpsF 3965949..3966236 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  RA292_RS20435 ychF 3966347..3967447 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  RA292_RS20440 yyaE 3967574..3969577 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  RA292_RS20445 yyzM 3969628..3969834 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=870685 RA292_RS20425 WP_003219228.1 3965390..3965908(-) (ssbA) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=870685 RA292_RS20425 WP_003219228.1 3965390..3965908(-) (ssbA) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378