Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHU17_RS01010 Genome accession   NZ_CP148289
Coordinates   211385..211921 (+) Length   178 a.a.
NCBI ID   WP_000168310.1    Uniprot ID   A0A7U8WHF9
Organism   Escherichia coli strain Z1323PEC0008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 206385..216921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU17_RS00990 (WHU17_00995) aphA 206674..207387 (+) 714 WP_001226928.1 acid phosphatase AphA -
  WHU17_RS00995 (WHU17_01000) yjbQ 207498..207914 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WHU17_RS01000 (WHU17_01005) yjbR 207918..208274 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WHU17_RS01005 (WHU17_01010) uvrA 208309..211131 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  WHU17_RS01010 (WHU17_01015) ssb 211385..211921 (+) 537 WP_000168310.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WHU17_RS01015 (WHU17_01020) yjcB 212020..212301 (-) 282 WP_001341690.1 YjcB family protein -
  WHU17_RS01020 (WHU17_01025) pdeC 212731..214317 (+) 1587 WP_000019527.1 c-di-GMP phosphodiesterase PdeC -
  WHU17_RS01025 (WHU17_01030) soxS 214320..214643 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WHU17_RS01030 (WHU17_01035) soxR 214729..215193 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19005.02 Da        Isoelectric Point: 5.2358

>NTDB_id=869795 WHU17_RS01010 WP_000168310.1 211385..211921(+) (ssb) [Escherichia coli strain Z1323PEC0008]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQSGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=869795 WHU17_RS01010 WP_000168310.1 211385..211921(+) (ssb) [Escherichia coli strain Z1323PEC0008]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGAGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U8WHF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

58.47

100

0.601
  ssb Neisseria meningitidis MC58

48.619

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.619

100

0.494