Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RA177_RS18855 Genome accession   NZ_CP132599
Coordinates   3717152..3717694 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus safensis strain PL23A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3712152..3722694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS18830 (RA177_18845) - 3712425..3713033 (-) 609 WP_034622294.1 alpha/beta hydrolase -
  RA177_RS18835 (RA177_18850) - 3713030..3714001 (-) 972 WP_034667828.1 ring-cleaving dioxygenase -
  RA177_RS18840 (RA177_18855) opuFB 3714193..3715710 (-) 1518 WP_185854020.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  RA177_RS18845 (RA177_18860) - 3715703..3716668 (-) 966 WP_185854021.1 ABC transporter ATP-binding protein -
  RA177_RS18850 (RA177_18865) rpsR 3716871..3717110 (-) 240 WP_008359105.1 30S ribosomal protein S18 -
  RA177_RS18855 (RA177_18870) ssbA 3717152..3717694 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  RA177_RS18860 (RA177_18875) rpsF 3717731..3718018 (-) 288 WP_024424058.1 30S ribosomal protein S6 -
  RA177_RS18865 (RA177_18880) ychF 3718127..3719227 (-) 1101 WP_185854022.1 redox-regulated ATPase YchF -
  RA177_RS18870 (RA177_18885) - 3719444..3719650 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  RA177_RS18875 (RA177_18890) - 3719946..3721265 (+) 1320 WP_185854023.1 hydrolase -
  RA177_RS18880 (RA177_18895) - 3721281..3721691 (+) 411 WP_024424061.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=869619 RA177_RS18855 WP_007497456.1 3717152..3717694(-) (ssbA) [Bacillus safensis strain PL23A]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=869619 RA177_RS18855 WP_007497456.1 3717152..3717694(-) (ssbA) [Bacillus safensis strain PL23A]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAACAGCTTTAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361