Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RAH45_RS11790 Genome accession   NZ_CP132595
Coordinates   2771031..2772086 (-) Length   351 a.a.
NCBI ID   WP_102077695.1    Uniprot ID   -
Organism   Psychrobacter sp. van23A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2766031..2777086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAH45_RS11770 (RAH45_11775) pilQ 2766717..2769089 (-) 2373 WP_102077697.1 type IV pilus secretin PilQ -
  RAH45_RS11775 (RAH45_11780) - 2769117..2769650 (-) 534 WP_306495290.1 pilus assembly protein PilP -
  RAH45_RS11780 (RAH45_11785) - 2769650..2770381 (-) 732 WP_068405096.1 type 4a pilus biogenesis protein PilO -
  RAH45_RS11785 (RAH45_11790) - 2770378..2771031 (-) 654 WP_306495291.1 PilN domain-containing protein -
  RAH45_RS11790 (RAH45_11795) comM 2771031..2772086 (-) 1056 WP_102077695.1 type IV pilus assembly protein PilM Machinery gene
  RAH45_RS11795 (RAH45_11800) - 2772300..2774975 (+) 2676 WP_306495292.1 penicillin-binding protein 1A -
  RAH45_RS11800 (RAH45_11805) - 2775109..2775651 (-) 543 WP_102077693.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38267.45 Da        Isoelectric Point: 4.2524

>NTDB_id=869540 RAH45_RS11790 WP_102077695.1 2771031..2772086(-) (comM) [Psychrobacter sp. van23A]
MRLFTSKSRHLIGVDICATSVKLVDIQRQQGIFHLKSYGIEALPEGVVVDKLIVDTEAVGNTIASLARRCQAAGSNAATA
VSGSAVITKIIDMDMVLNDVEREAQIRLDADQYIPYLLEDVNLDFEVLGPSLINDDMVQVLLAASRSENVDQRVDALTFG
GLQTEVMDIESHAIERAFGLMVDNLSNIPDLVALVDIGHNQTTLYIAKNGEFIYSREQLFGGAQLTDAIQNRYGLSAEEA
TISKRERTLPDDYYPEVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQRLGVPVTIANPFIN
MTIAPYIDNEQLAIDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=869540 RAH45_RS11790 WP_102077695.1 2771031..2772086(-) (comM) [Psychrobacter sp. van23A]
GTGAGGCTATTTACTTCTAAAAGTCGGCATTTGATTGGCGTGGATATTTGCGCCACGTCAGTAAAGCTGGTCGACATTCA
GCGCCAACAAGGTATCTTTCATTTAAAGTCTTACGGTATCGAAGCGCTACCAGAAGGCGTAGTCGTTGACAAACTCATCG
TAGACACTGAGGCCGTAGGTAATACTATAGCAAGCCTAGCACGGCGTTGCCAAGCTGCGGGCAGTAATGCGGCAACTGCT
GTATCAGGTTCTGCTGTGATTACCAAAATTATTGATATGGATATGGTGCTTAACGATGTCGAGCGTGAAGCGCAGATTCG
TTTGGATGCCGATCAATATATTCCTTATTTATTAGAAGATGTAAATTTAGATTTTGAAGTACTAGGGCCGTCACTGATAA
ATGATGATATGGTGCAAGTGCTCCTAGCGGCGTCGCGCTCAGAAAACGTCGACCAAAGAGTCGATGCGCTTACTTTTGGC
GGTTTGCAAACCGAAGTGATGGATATCGAATCGCATGCTATTGAGCGTGCCTTTGGTTTGATGGTCGATAATCTCTCAAA
TATACCAGACTTGGTCGCTTTAGTTGATATTGGTCATAACCAAACGACCTTATATATAGCTAAAAACGGTGAGTTTATTT
ATAGCCGTGAACAGTTATTTGGTGGTGCGCAGCTCACTGATGCGATTCAAAACCGTTATGGACTATCTGCTGAAGAAGCA
ACCATTAGCAAACGTGAACGCACTCTACCTGATGATTACTACCCTGAGGTATTGACACCGTTTATCGAAAATACCATTCA
GCAAATTACGCGCTCATTACAGTTTTACTTCTCATCAAGCCAATACAGCAGTATCGATCATGTCGTGCTAGCAGGTGGTA
GCAGCTCTATTGCAGGGCTTGCCGGTATGGCGCAGCAACGATTGGGTGTCCCTGTCACTATCGCAAATCCGTTCATCAAC
ATGACCATTGCTCCTTATATCGATAATGAGCAACTGGCGATTGATGCACCAAGCTTAATGGCCGCGTGCGGTCTTGCGTT
AAGGAGCTTCGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.712

100

0.507
  pilM Acinetobacter baumannii D1279779

50.142

100

0.501
  comM Acinetobacter baylyi ADP1

48.148

100

0.481
  pilM Legionella pneumophila strain ERS1305867

39.943

100

0.402