Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RAL98_RS04180 | Genome accession | NZ_CP132544 |
| Coordinates | 820031..820546 (+) | Length | 171 a.a. |
| NCBI ID | WP_251521359.1 | Uniprot ID | - |
| Organism | Staphylococcus sp. HKU1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 818496..840630 | 820031..820546 | within | 0 |
Gene organization within MGE regions
Location: 818496..840630
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RAL98_RS04170 (RAL98_04145) | - | 818496..819284 (-) | 789 | WP_251521364.1 | GH25 family lysozyme | - |
| RAL98_RS04175 (RAL98_04150) | rpsF | 819707..820012 (+) | 306 | WP_251521361.1 | 30S ribosomal protein S6 | - |
| RAL98_RS04180 (RAL98_04155) | ssbA | 820031..820546 (+) | 516 | WP_251521359.1 | single-stranded DNA-binding protein | Machinery gene |
| RAL98_RS04185 (RAL98_04160) | rpsR | 820669..820911 (+) | 243 | WP_251521358.1 | 30S ribosomal protein S18 | - |
| RAL98_RS04190 (RAL98_04165) | - | 821292..822506 (-) | 1215 | WP_418129160.1 | tyrosine-type recombinase/integrase | - |
| RAL98_RS04195 (RAL98_04170) | - | 822733..823920 (-) | 1188 | WP_418129162.1 | hypothetical protein | - |
| RAL98_RS04200 (RAL98_04175) | - | 823975..824154 (-) | 180 | WP_418129164.1 | hypothetical protein | - |
| RAL98_RS04205 (RAL98_04180) | - | 824284..824421 (-) | 138 | WP_204179751.1 | hypothetical protein | - |
| RAL98_RS04210 (RAL98_04185) | - | 824739..825305 (-) | 567 | WP_418129166.1 | helix-turn-helix domain-containing protein | - |
| RAL98_RS04215 (RAL98_04190) | - | 825453..825674 (+) | 222 | WP_418129168.1 | helix-turn-helix domain-containing protein | - |
| RAL98_RS04220 (RAL98_04195) | - | 825677..825949 (+) | 273 | WP_418129170.1 | helix-turn-helix domain-containing protein | - |
| RAL98_RS04225 (RAL98_04200) | - | 825949..826107 (+) | 159 | WP_418129172.1 | hypothetical protein | - |
| RAL98_RS04230 (RAL98_04205) | - | 826109..826468 (+) | 360 | WP_418129174.1 | pathogenicity island protein | - |
| RAL98_RS04235 (RAL98_04210) | - | 826470..826823 (+) | 354 | WP_418129176.1 | hypothetical protein | - |
| RAL98_RS04240 (RAL98_04215) | - | 826816..827124 (+) | 309 | WP_418129178.1 | hypothetical protein | - |
| RAL98_RS04245 (RAL98_04220) | - | 827198..828070 (+) | 873 | WP_418129179.1 | primase alpha helix C-terminal domain-containing protein | - |
| RAL98_RS04250 (RAL98_04225) | - | 828084..829577 (+) | 1494 | WP_418129181.1 | phage/plasmid primase, P4 family | - |
| RAL98_RS04255 (RAL98_04230) | - | 829842..830204 (+) | 363 | WP_418129183.1 | pathogenicity island protein | - |
| RAL98_RS04260 (RAL98_04235) | - | 830206..830490 (+) | 285 | WP_418129185.1 | pathogenicity island protein | - |
| RAL98_RS04265 (RAL98_04240) | - | 830892..831212 (+) | 321 | WP_418129187.1 | DUF3102 domain-containing protein | - |
| RAL98_RS04270 (RAL98_04245) | - | 831368..831712 (+) | 345 | WP_418129189.1 | pathogenicity island protein | - |
| RAL98_RS04275 (RAL98_04250) | - | 831718..832266 (+) | 549 | WP_418129191.1 | hypothetical protein | - |
| RAL98_RS04280 (RAL98_04255) | - | 832268..832426 (+) | 159 | WP_418129193.1 | hypothetical protein | - |
| RAL98_RS04285 (RAL98_04260) | - | 832452..832709 (+) | 258 | WP_262561416.1 | hypothetical protein | - |
| RAL98_RS04290 (RAL98_04265) | - | 832722..833282 (+) | 561 | WP_418129195.1 | hypothetical protein | - |
| RAL98_RS04295 (RAL98_04270) | - | 833298..833849 (+) | 552 | WP_418129197.1 | terminase small subunit | - |
| RAL98_RS04300 (RAL98_04275) | - | 833901..834293 (-) | 393 | WP_418129199.1 | hypothetical protein | - |
| RAL98_RS04305 (RAL98_04280) | - | 834315..834794 (-) | 480 | WP_418129201.1 | hypothetical protein | - |
| RAL98_RS04310 (RAL98_04285) | - | 834987..835373 (-) | 387 | WP_418129203.1 | hypothetical protein | - |
| RAL98_RS04315 (RAL98_04290) | - | 835718..836125 (+) | 408 | WP_418129205.1 | YjdF family protein | - |
| RAL98_RS04320 (RAL98_04295) | - | 836464..836907 (+) | 444 | WP_418129207.1 | DUF3995 domain-containing protein | - |
| RAL98_RS04325 (RAL98_04300) | - | 837387..837563 (+) | 177 | WP_285813500.1 | VraH family peptide resistance protein | - |
| RAL98_RS04330 (RAL98_04305) | - | 837843..838979 (+) | 1137 | WP_251521356.1 | hypothetical protein | - |
| RAL98_RS04335 (RAL98_04310) | - | 839076..839861 (-) | 786 | WP_251521354.1 | poly-gamma-glutamate hydrolase family protein | - |
| RAL98_RS04340 (RAL98_04315) | - | 840400..840630 (-) | 231 | WP_251521350.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19050.61 Da Isoelectric Point: 4.7278
>NTDB_id=869376 RAL98_RS04180 WP_251521359.1 820031..820546(+) (ssbA) [Staphylococcus sp. HKU1]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHSQDGNNNFQDFGQGFGGQQSGQNASYQNNNNSSNQNNQSDNPFANANG
PIDISDDDLPF
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHSQDGNNNFQDFGQGFGGQQSGQNASYQNNNNSSNQNNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=869376 RAL98_RS04180 WP_251521359.1 820031..820546(+) (ssbA) [Staphylococcus sp. HKU1]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACAAAGGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACCCTTGCGGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTCGTTT
TTAGAAAGCAAGCAGAAAATGTAAATAACTATTTATTCAAAGGTAGTTTAGCAGGCGTCGATGGTCGCATCCAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTCACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGCCATTCACAAGATGGAAACAACAATTTCCAAGACTTTGGACAAGGCTTTGGCGGACAACAATCAGGTC
AAAATGCTTCTTATCAAAACAATAACAATTCATCTAACCAAAATAATCAATCAGACAACCCATTTGCGAATGCAAACGGT
CCGATTGATATTAGTGATGATGACTTACCATTCTAA
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACAAAGGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACCCTTGCGGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTCGTTT
TTAGAAAGCAAGCAGAAAATGTAAATAACTATTTATTCAAAGGTAGTTTAGCAGGCGTCGATGGTCGCATCCAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTCACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGCCATTCACAAGATGGAAACAACAATTTCCAAGACTTTGGACAAGGCTTTGGCGGACAACAATCAGGTC
AAAATGCTTCTTATCAAAACAATAACAATTCATCTAACCAAAATAATCAATCAGACAACCCATTTGCGAATGCAAACGGT
CCGATTGATATTAGTGATGATGACTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.894 |
100 |
0.637 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.14 |
100 |
0.561 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.091 |
64.327 |
0.38 |
| ssb | Glaesserella parasuis strain SC1401 |
32.979 |
100 |
0.363 |