Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAM03_RS08160 Genome accession   NZ_CP132382
Coordinates   1803347..1803862 (+) Length   171 a.a.
NCBI ID   WP_065579262.1    Uniprot ID   -
Organism   Gilliamella apis strain ESL0169     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1798347..1808862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM03_RS08130 (RAM03_08130) - 1799018..1799719 (+) 702 WP_110453236.1 YggS family pyridoxal phosphate-dependent enzyme -
  RAM03_RS08135 (RAM03_08135) - 1799756..1800313 (+) 558 WP_086320070.1 YggT family protein -
  RAM03_RS08140 (RAM03_08140) - 1800341..1800763 (-) 423 WP_086320071.1 YcgN family cysteine cluster protein -
  RAM03_RS08145 (RAM03_08145) - 1800760..1801008 (-) 249 WP_081298923.1 YcgL domain-containing protein -
  RAM03_RS08150 (RAM03_08150) - 1801031..1801990 (-) 960 WP_110453235.1 glucokinase -
  RAM03_RS08155 (RAM03_08155) corA 1802190..1803131 (-) 942 WP_065651845.1 magnesium/cobalt transporter CorA -
  RAM03_RS08160 (RAM03_08160) ssb 1803347..1803862 (+) 516 WP_065579262.1 single-stranded DNA-binding protein Machinery gene
  RAM03_RS08165 (RAM03_08165) - 1803965..1804330 (-) 366 WP_306241338.1 helix-turn-helix domain-containing protein -
  RAM03_RS08170 (RAM03_08170) - 1804569..1805231 (+) 663 WP_133052222.1 MarC family NAAT transporter -
  RAM03_RS08175 (RAM03_08175) - 1805291..1805983 (-) 693 WP_034903634.1 DUF2461 domain-containing protein -
  RAM03_RS08180 (RAM03_08180) kdsB 1805987..1806751 (-) 765 WP_110453233.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RAM03_RS08185 (RAM03_08185) - 1806773..1806958 (-) 186 WP_110453232.1 Trm112 family protein -
  RAM03_RS08190 (RAM03_08190) lpxK 1806955..1807968 (-) 1014 WP_110453344.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18710.49 Da        Isoelectric Point: 4.6400

>NTDB_id=868905 RAM03_RS08160 WP_065579262.1 1803347..1803862(+) (ssb) [Gilliamella apis strain ESL0169]
MANRGINKVILVGNLGQDPEVRYMPNGNAVANFSVATSETWKDKQTGENRDRTEWHRVVVFGKLAEIAGEYVKKGTQVYL
EGQLQTRKWQDQAGNDRYSTEVVINAVGGTLQILGSRSGDSFNDGSQNWGQSANNTSSAPSTSRPSTTNEPAASQPTMPE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=868905 RAM03_RS08160 WP_065579262.1 1803347..1803862(+) (ssb) [Gilliamella apis strain ESL0169]
ATGGCAAATAGAGGTATTAATAAAGTCATTTTAGTAGGGAATTTAGGTCAAGATCCAGAAGTTCGGTACATGCCAAATGG
TAACGCTGTCGCAAATTTTAGTGTTGCTACATCAGAAACTTGGAAAGATAAACAAACTGGTGAAAACCGAGATCGTACCG
AATGGCATCGCGTTGTTGTATTTGGTAAATTAGCTGAAATTGCTGGCGAATATGTTAAAAAAGGTACTCAAGTTTATTTA
GAAGGACAATTACAAACTCGTAAATGGCAAGACCAAGCGGGTAATGATCGTTATTCTACTGAAGTAGTGATCAATGCTGT
AGGTGGAACATTACAAATTTTAGGCTCTCGTTCAGGAGATAGTTTTAATGATGGTTCACAAAACTGGGGACAAAGTGCTA
ATAATACTTCGTCTGCTCCTAGTACATCACGTCCTTCAACAACAAATGAACCAGCAGCAAGTCAACCAACTATGCCAGAA
CCACCAATGGATTTCGATGACGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.116

100

0.626
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.556
  ssb Neisseria meningitidis MC58

49.153

100

0.509
  ssb Neisseria gonorrhoeae MS11

49.153

100

0.509