Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Q9451_RS28285 | Genome accession | NZ_CP132350 |
| Coordinates | 6253846..6254391 (-) | Length | 181 a.a. |
| NCBI ID | WP_003255446.1 | Uniprot ID | I7CBQ6 |
| Organism | Pseudomonas sp. NY8896 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 6234120..6253713 | 6253846..6254391 | flank | 133 |
Gene organization within MGE regions
Location: 6234120..6254391
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9451_RS28185 (Q9451_28195) | - | 6234219..6235670 (+) | 1452 | WP_150104939.1 | hypothetical protein | - |
| Q9451_RS28190 (Q9451_28200) | - | 6235758..6236459 (+) | 702 | WP_012270256.1 | hypothetical protein | - |
| Q9451_RS28195 (Q9451_28205) | - | 6236555..6236935 (+) | 381 | WP_230388269.1 | very short patch repair endonuclease | - |
| Q9451_RS28200 (Q9451_28210) | - | 6236963..6237430 (-) | 468 | WP_041166357.1 | hypothetical protein | - |
| Q9451_RS28205 (Q9451_28215) | - | 6237626..6238606 (-) | 981 | WP_024086516.1 | IS5-like element ISPa26 family transposase | - |
| Q9451_RS28210 (Q9451_28220) | - | 6238649..6239881 (-) | 1233 | WP_345960822.1 | ATP-binding protein | - |
| Q9451_RS28215 (Q9451_28225) | - | 6239890..6241023 (-) | 1134 | WP_012270253.1 | DNA cytosine methyltransferase | - |
| Q9451_RS28220 (Q9451_28230) | - | 6241395..6242741 (+) | 1347 | WP_012270252.1 | ATP-binding protein | - |
| Q9451_RS28225 (Q9451_28235) | - | 6242741..6243706 (+) | 966 | WP_322353530.1 | O-methyltransferase | - |
| Q9451_RS28230 (Q9451_28240) | - | 6243857..6244330 (-) | 474 | WP_345960824.1 | hypothetical protein | - |
| Q9451_RS28235 (Q9451_28245) | - | 6244534..6246063 (-) | 1530 | WP_041166353.1 | IS66 family transposase | - |
| Q9451_RS28240 (Q9451_28250) | tnpB | 6246082..6246441 (-) | 360 | WP_012270248.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| Q9451_RS28245 (Q9451_28255) | - | 6246486..6246818 (-) | 333 | WP_012270247.1 | hypothetical protein | - |
| Q9451_RS28250 (Q9451_28260) | - | 6246904..6247179 (+) | 276 | WP_012270246.1 | helix-turn-helix transcriptional regulator | - |
| Q9451_RS28255 (Q9451_28265) | - | 6247181..6247645 (-) | 465 | WP_012270245.1 | hypothetical protein | - |
| Q9451_RS28260 (Q9451_28270) | - | 6247638..6248888 (-) | 1251 | WP_345960825.1 | hypothetical protein | - |
| Q9451_RS28265 (Q9451_28275) | - | 6248968..6249948 (+) | 981 | WP_014003920.1 | IS5-like element ISPa41 family transposase | - |
| Q9451_RS28270 (Q9451_28280) | - | 6249920..6250879 (-) | 960 | WP_345960826.1 | hypothetical protein | - |
| Q9451_RS28275 (Q9451_28285) | - | 6250869..6252434 (-) | 1566 | WP_012270243.1 | site-specific integrase | - |
| Q9451_RS28280 (Q9451_28290) | - | 6252427..6253713 (-) | 1287 | WP_012270242.1 | site-specific integrase | - |
| Q9451_RS28285 (Q9451_28295) | ssb | 6253846..6254391 (-) | 546 | WP_003255446.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20059.16 Da Isoelectric Point: 5.9286
>NTDB_id=868358 Q9451_RS28285 WP_003255446.1 6253846..6254391(-) (ssb) [Pseudomonas sp. NY8896]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=868358 Q9451_RS28285 WP_003255446.1 6253846..6254391(-) (ssb) [Pseudomonas sp. NY8896]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGTTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGTCGTCCGCAGGGTCAGCAGCAGGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACGGTG
GCGGTCAACAGCAGCAGTACAACCAGGCCCCGCCTCGTCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCACAGCAGCCAGCTCCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGTTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGTCGTCCGCAGGGTCAGCAGCAGGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACGGTG
GCGGTCAACAGCAGCAGTACAACCAGGCCCCGCCTCGTCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCACAGCAGCCAGCTCCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.831 |
100 |
0.575 |
| ssb | Glaesserella parasuis strain SC1401 |
47.12 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
48.634 |
100 |
0.492 |
| ssb | Neisseria gonorrhoeae MS11 |
48.634 |
100 |
0.492 |