Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAB71_RS07940 Genome accession   NZ_CP132343
Coordinates   1882516..1883040 (+) Length   174 a.a.
NCBI ID   WP_010341990.1    Uniprot ID   A0A0A8E100
Organism   Xanthomonas sacchari strain CFBP4641     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1877516..1888040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB71_RS07925 (RAB71_07930) murD 1878650..1880086 (+) 1437 WP_029561960.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  RAB71_RS07930 (RAB71_07935) - 1880166..1880969 (+) 804 WP_029561959.1 dienelactone hydrolase family protein -
  RAB71_RS07935 (RAB71_07940) - 1881236..1882234 (-) 999 WP_041500070.1 polyprenyl synthetase family protein -
  RAB71_RS07940 (RAB71_07945) ssb 1882516..1883040 (+) 525 WP_010341990.1 single-stranded DNA-binding protein Machinery gene
  RAB71_RS07945 (RAB71_07950) - 1883851..1884747 (+) 897 WP_029561957.1 hydroxypyruvate isomerase family protein -
  RAB71_RS07950 (RAB71_07955) - 1884778..1886463 (+) 1686 WP_010341988.1 GMC oxidoreductase -
  RAB71_RS07955 (RAB71_07960) - 1886463..1887035 (+) 573 WP_010341987.1 gluconate 2-dehydrogenase subunit 3 family protein -
  RAB71_RS07960 (RAB71_07965) - 1887079..1887822 (+) 744 WP_010341986.1 DUF1080 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18663.59 Da        Isoelectric Point: 5.3243

>NTDB_id=868292 RAB71_RS07940 WP_010341990.1 1882516..1883040(+) (ssb) [Xanthomonas sacchari strain CFBP4641]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDRDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGMGGGDRPQRSAPPRQERSGMGGGGGGGGQDYAPRRQQPAPQQ
SAPMDDFADDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=868292 RAB71_RS07940 WP_010341990.1 1882516..1883040(+) (ssb) [Xanthomonas sacchari strain CFBP4641]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGGATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACCAGCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTCGGTGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTATGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGGCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAGGGCGGTGGTGGCGGCATGGGCGGCGGCGACCGTCCGCAGCGCTCGGCACCGCCGCGCCAGG
AACGCTCCGGCATGGGCGGTGGCGGCGGTGGCGGCGGGCAGGATTACGCCCCGCGCCGGCAGCAGCCGGCCCCGCAGCAG
TCCGCGCCGATGGACGACTTTGCGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8E100

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.444

100

0.483
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.471
  ssb Neisseria meningitidis MC58

44.571

100

0.448
  ssb Neisseria gonorrhoeae MS11

44.571

100

0.448