Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAB70_RS16555 Genome accession   NZ_CP132342
Coordinates   3936430..3936957 (-) Length   175 a.a.
NCBI ID   WP_048489408.1    Uniprot ID   A0A0J6G4U8
Organism   Xanthomonas sontii strain PPL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3931430..3941957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB70_RS16535 (RAB70_16535) - 3931600..3932343 (-) 744 WP_173003402.1 DUF1080 domain-containing protein -
  RAB70_RS16540 (RAB70_16540) - 3932387..3932959 (-) 573 WP_017917444.1 gluconate 2-dehydrogenase subunit 3 family protein -
  RAB70_RS16545 (RAB70_16545) - 3932959..3934644 (-) 1686 WP_043095703.1 GMC oxidoreductase -
  RAB70_RS16550 (RAB70_16550) - 3934675..3935571 (-) 897 WP_148829045.1 hydroxypyruvate isomerase family protein -
  RAB70_RS16555 (RAB70_16555) ssb 3936430..3936957 (-) 528 WP_048489408.1 single-stranded DNA-binding protein Machinery gene
  RAB70_RS16560 (RAB70_16560) - 3937238..3938236 (+) 999 WP_148829044.1 polyprenyl synthetase family protein -
  RAB70_RS16565 (RAB70_16565) - 3938250..3938378 (+) 129 WP_265529709.1 hypothetical protein -
  RAB70_RS16570 (RAB70_16570) - 3938445..3939389 (+) 945 WP_353949534.1 IS481 family transposase -
  RAB70_RS16575 (RAB70_16575) - 3939768..3940571 (-) 804 WP_148827920.1 dienelactone hydrolase family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18720.64 Da        Isoelectric Point: 5.3243

>NTDB_id=868283 RAB70_RS16555 WP_048489408.1 3936430..3936957(-) (ssb) [Xanthomonas sontii strain PPL1]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDRDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGMGGGDRPQRSAPPRQERSGMGGGGGGGGGQDYAPRRQQPAPQ
QSAPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=868283 RAB70_RS16555 WP_048489408.1 3936430..3936957(-) (ssb) [Xanthomonas sontii strain PPL1]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACCAGCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTCGGTGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAGGGCGGTGGCGGCGGCATGGGCGGCGGCGACCGTCCGCAGCGCTCGGCGCCGCCGCGCCAGG
AACGCTCCGGCATGGGCGGTGGCGGCGGTGGTGGCGGCGGGCAGGATTACGCGCCGCGCCGGCAGCAGCCGGCCCCGCAG
CAGTCCGCGCCGATGGACGACTTCGCGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6G4U8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.211

100

0.48
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.469
  ssb Neisseria meningitidis MC58

45.455

100

0.457
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.457