Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RAB70_RS08500 Genome accession   NZ_CP132342
Coordinates   2002908..2003966 (+) Length   352 a.a.
NCBI ID   WP_017908825.1    Uniprot ID   A0A0J6FVA6
Organism   Xanthomonas sontii strain PPL1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997908..2008966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB70_RS08485 (RAB70_08485) - 1998003..1999292 (+) 1290 WP_026143410.1 citrate synthase -
  RAB70_RS08490 (RAB70_08490) - 1999464..2000108 (-) 645 WP_148830003.1 hypothetical protein -
  RAB70_RS08495 (RAB70_08495) - 2000263..2002689 (-) 2427 WP_148830004.1 penicillin-binding protein 1A -
  RAB70_RS08500 (RAB70_08500) pilM 2002908..2003966 (+) 1059 WP_017908825.1 pilus assembly protein PilM Machinery gene
  RAB70_RS08505 (RAB70_08505) - 2003966..2004757 (+) 792 WP_148830005.1 PilN domain-containing protein -
  RAB70_RS08510 (RAB70_08510) - 2004754..2005428 (+) 675 WP_017914107.1 type 4a pilus biogenesis protein PilO -
  RAB70_RS08515 (RAB70_08515) - 2005425..2005964 (+) 540 WP_026143551.1 pilus assembly protein PilP -
  RAB70_RS08520 (RAB70_08520) - 2005985..2007895 (+) 1911 WP_148830319.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37696.33 Da        Isoelectric Point: 4.4501

>NTDB_id=868272 RAB70_RS08500 WP_017908825.1 2002908..2003966(+) (pilM) [Xanthomonas sontii strain PPL1]
MGLIPKSQQPLIGIDISSTAVKLLQLSRNGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKVIPMPAELDESELEAQVELEAVNYIPYPIDEVNLDFEVLGVIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGIVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=868272 RAB70_RS08500 WP_017908825.1 2002908..2003966(+) (pilM) [Xanthomonas sontii strain PPL1]
GTGGGGCTTATCCCAAAGAGTCAGCAGCCGCTGATCGGCATCGACATCAGCTCGACCGCGGTCAAGCTGCTGCAGCTTTC
GCGTAACGGCAACCGGTTCCGCGTCGAGCATTACGCCGTCGAACCCTTGCCGCCCAATGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGGTCCGGTACCCGCGCCAAGCATGCCGCGGCCGCC
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTGGACGAGAGCGAGCTGGAAGCCCAGGTCGA
GCTGGAGGCGGTGAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGATTTCGAGGTGCTGGGCGTCATCCCCAACA
ACCCCGAGATGGTGCAGGTACTGCTGGCCGCCTCGCGCTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGC
GGGCTCGTGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCGCTGGTGGCCAGCGAGCTGCCGGT
GGCCGCCGACGGCATCGTCGCCCTGGTCGACATCGGCGCCACCATGACCACCCTCAATGTCCTGCGTGGCGGGCGCAGCC
TGTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAATTCAACCGCGTCGACCACATCGTCCTGGCCGGCG
GCTGCGCCGCCCTGGCCGGATTGCCGGAGATGGTGGAGGAGCAACTGGGCGTGGCCACGGTGGTCGCCAACCCGTTGGCG
CAGATGACCCTGGGGCCGAAGGTGCAGGCGCATGCGCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6FVA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.714

99.432

0.474