Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q8L25_RS00215 Genome accession   NZ_CP132339
Coordinates   54455..54964 (-) Length   169 a.a.
NCBI ID   WP_065306109.1    Uniprot ID   A0A1A7C6H8
Organism   Janthinobacterium sp. J1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 49455..59964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8L25_RS00195 - 50171..50950 (-) 780 WP_308923009.1 acetoin reductase -
  Q8L25_RS00200 - 51095..52189 (-) 1095 WP_308923010.1 hypothetical protein -
  Q8L25_RS00205 - 52332..52868 (+) 537 WP_308923011.1 hypothetical protein -
  Q8L25_RS00210 - 53036..54367 (+) 1332 WP_308923012.1 deoxyguanosinetriphosphate triphosphohydrolase -
  Q8L25_RS00215 ssb 54455..54964 (-) 510 WP_065306109.1 single-stranded DNA-binding protein Machinery gene
  Q8L25_RS00220 uvrA 55344..58193 (+) 2850 WP_308923013.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18151.30 Da        Isoelectric Point: 5.9416

>NTDB_id=868250 Q8L25_RS00215 WP_065306109.1 54455..54964(-) (ssb) [Janthinobacterium sp. J1-1]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAENMQMLGGRSGMGGDAGGDDSYGGNSGGYDAPAPRQAPAPRPAPAPAPRPAPKPAPNF
SDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=868250 Q8L25_RS00215 WP_065306109.1 54455..54964(-) (ssb) [Janthinobacterium sp. J1-1]
ATGGCATCAGTCAACAAAGTCATTATCGTCGGCAATCTGGGCCGCGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAGTTGACCGAATGGC
ATCGCATCTCGTTCTTCGGCCGCCTGGCTGAAATCGTCGGCCAGTACCTGAAAAAAGGTTCCTCGGTCTACGTCGAAGGC
CGCCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCTGAAAACATGCAAAT
GCTGGGCGGCCGTTCCGGCATGGGCGGCGACGCCGGTGGCGACGACAGCTACGGCGGCAACAGCGGCGGCTACGACGCCC
CGGCCCCACGCCAGGCACCAGCCCCGCGTCCTGCTCCGGCGCCAGCACCACGCCCGGCACCGAAGCCAGCGCCGAACTTT
TCGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A7C6H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

54.023

100

0.556
  ssb Neisseria meningitidis MC58

52.571

100

0.544
  ssb Glaesserella parasuis strain SC1401

50.276

100

0.538
  ssb Vibrio cholerae strain A1552

50.279

100

0.533