Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAL92_RS03490 Genome accession   NZ_CP132337
Coordinates   732455..732949 (+) Length   164 a.a.
NCBI ID   WP_308723754.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain Tg_9B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 727455..737949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL92_RS03480 (RAL92_03485) uvrA 728007..730841 (-) 2835 WP_346841620.1 excinuclease ABC subunit UvrA -
  RAL92_RS03485 (RAL92_03490) - 731051..732445 (+) 1395 WP_044411068.1 MFS transporter -
  RAL92_RS03490 (RAL92_03495) ssb 732455..732949 (+) 495 WP_308723754.1 single-stranded DNA-binding protein Machinery gene
  RAL92_RS03495 (RAL92_03500) - 733298..733549 (+) 252 Protein_687 integrase core domain-containing protein -
  RAL92_RS03500 (RAL92_03505) - 733627..735960 (-) 2334 WP_346841621.1 hypothetical protein -
  RAL92_RS03505 (RAL92_03510) - 736254..737174 (-) 921 WP_346841622.1 hypothetical protein -
  RAL92_RS03510 (RAL92_03515) - 737174..737920 (-) 747 WP_346841623.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18251.17 Da        Isoelectric Point: 5.3027

>NTDB_id=868207 RAL92_RS03490 WP_308723754.1 732455..732949(+) (ssb) [Pseudomonas otitidis strain Tg_9B]
MARGVNKVILVGNVGGDPEVRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGQMQLLGGRPGSDGDSAPRAPRPQREPQQSAPREQRPAPQPAAQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=868207 RAL92_RS03490 WP_308723754.1 732455..732949(+) (ssb) [Pseudomonas otitidis strain Tg_9B]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCAACGTCGGCGGCGACCCTGAAGTCCGCTACATGCCCAACGGCAA
CGCCGTGACCAACATCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAACGCACCGAGT
GGCACCGCGTGGTGTTCTTCGGCCGCCTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGGCAGGACGGCCAGGACCGCTACACCACCGAAATCGTCGTGGACATCAACGG
CCAGATGCAACTGCTCGGCGGTCGTCCCGGCAGCGATGGCGACTCCGCCCCGCGCGCCCCGCGTCCGCAGCGCGAGCCGC
AGCAGTCCGCCCCGCGCGAACAGCGTCCGGCTCCCCAGCCCGCCGCCCAGCCGGCCCCGGACTACGACAGCTTCGACGAC
GACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60.227

100

0.646
  ssb Glaesserella parasuis strain SC1401

53.297

100

0.591
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.524
  ssb Neisseria meningitidis MC58

45.81

100

0.5