Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAL88_RS01360 Genome accession   NZ_CP132336
Coordinates   291314..291820 (+) Length   168 a.a.
NCBI ID   WP_306266725.1    Uniprot ID   -
Organism   Pararhizobium sp. IMCC3301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 286314..296820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAL88_RS01355 uvrA 287917..290790 (-) 2874 WP_306269543.1 excinuclease ABC subunit UvrA -
  RAL88_RS01360 ssb 291314..291820 (+) 507 WP_306266725.1 single-stranded DNA-binding protein Machinery gene
  RAL88_RS01365 - 291804..292202 (+) 399 WP_306266727.1 hypothetical protein -
  RAL88_RS01370 - 292258..292881 (-) 624 WP_306266729.1 MarC family protein -
  RAL88_RS01375 gyrA 293209..295941 (+) 2733 WP_371932158.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18453.25 Da        Isoelectric Point: 5.0500

>NTDB_id=868196 RAL88_RS01360 WP_306266725.1 291314..291820(+) (ssb) [Pararhizobium sp. IMCC3301]
MAGSVNKVILVGNLGADPEIRRLNSGDPVVNLRIATSESWRDKNSGERREKTEWHQVVIFNDNLAKVAENYLKKGAKVYL
EGQLQTRQWEDQSGQKRYSTEIVLQKYRGELQMLDSRGQGGQESAGGGQDRGAVTNQGGNNFGQSDPMKGGSSGGSNFSD
DMDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=868196 RAL88_RS01360 WP_306266725.1 291314..291820(+) (ssb) [Pararhizobium sp. IMCC3301]
ATGGCTGGCAGTGTCAACAAAGTAATATTGGTGGGAAATCTGGGAGCAGACCCGGAGATACGCCGTTTGAATTCGGGCGA
CCCTGTGGTCAATCTTCGCATCGCCACCAGCGAATCCTGGCGCGACAAGAATTCCGGGGAACGCCGCGAGAAAACCGAAT
GGCACCAGGTCGTGATTTTCAACGACAATCTCGCAAAAGTTGCTGAAAATTATCTCAAAAAGGGTGCCAAAGTCTATCTG
GAGGGCCAGTTGCAAACCCGGCAATGGGAAGATCAGTCCGGCCAGAAACGCTACTCCACTGAAATCGTTTTGCAGAAATA
TCGCGGCGAATTGCAGATGCTGGATTCCCGCGGGCAGGGCGGTCAGGAAAGTGCCGGCGGCGGCCAGGATCGCGGTGCTG
TCACCAATCAGGGCGGCAATAATTTCGGTCAGTCAGACCCCATGAAAGGCGGCAGCAGCGGCGGCAGTAATTTTTCCGAC
GACATGGATGATGAAATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.548
  ssb Vibrio cholerae strain A1552

50.867

100

0.524
  ssb Neisseria meningitidis MC58

37.43

100

0.399
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.399