Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q9293_RS04745 Genome accession   NZ_CP132333
Coordinates   1090410..1090880 (+) Length   156 a.a.
NCBI ID   WP_285576280.1    Uniprot ID   -
Organism   Geothrix sp. PMB-07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1085410..1095880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9293_RS04725 (Q9293_04725) - 1085622..1088402 (+) 2781 WP_306250559.1 serine/threonine-protein kinase -
  Q9293_RS04730 (Q9293_04730) - 1088399..1088626 (-) 228 WP_306250561.1 hypothetical protein -
  Q9293_RS04735 (Q9293_04735) - 1088764..1089552 (-) 789 WP_306250563.1 enoyl-CoA hydratase/isomerase family protein -
  Q9293_RS04740 (Q9293_04740) - 1089568..1090308 (-) 741 WP_306250565.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  Q9293_RS04745 (Q9293_04745) ssb 1090410..1090880 (+) 471 WP_285576280.1 single-stranded DNA-binding protein Machinery gene
  Q9293_RS04750 (Q9293_04750) - 1091083..1092708 (+) 1626 WP_306250568.1 ATP-binding cassette domain-containing protein -
  Q9293_RS04755 (Q9293_04755) - 1092886..1094514 (+) 1629 WP_306250569.1 response regulator -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16806.65 Da        Isoelectric Point: 6.4716

>NTDB_id=868177 Q9293_RS04745 WP_285576280.1 1090410..1090880(+) (ssb) [Geothrix sp. PMB-07]
MSGSLNKVMLIGNLGRDPELKATPSGQSVARFSVATTETWKNQSGEKQSKTEWHNIVVWGKQAEIAEKYLRKGKQVMIEG
RIQYREYTDQAGVKKTACDIRCDNFVMLGRMDEGGGGRDSGGYGGRASGGGSQDFEDHGAPSPAGGGSFPDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=868177 Q9293_RS04745 WP_285576280.1 1090410..1090880(+) (ssb) [Geothrix sp. PMB-07]
ATGTCCGGATCCTTGAACAAAGTCATGCTCATCGGCAACCTGGGCCGCGACCCCGAGCTGAAGGCCACGCCTTCGGGTCA
GAGCGTCGCCCGCTTTTCCGTGGCCACCACCGAAACCTGGAAGAACCAGAGCGGTGAAAAGCAGAGCAAAACGGAATGGC
ACAACATCGTGGTGTGGGGCAAGCAGGCCGAGATCGCCGAGAAGTACCTGCGCAAGGGCAAGCAGGTGATGATCGAGGGC
CGCATCCAGTACCGCGAATACACCGATCAGGCCGGCGTGAAGAAGACCGCCTGCGACATCCGCTGCGACAACTTCGTGAT
GCTGGGCCGCATGGATGAAGGCGGCGGTGGCCGCGACAGCGGTGGCTATGGTGGCCGCGCTTCCGGCGGCGGCTCCCAGG
ACTTCGAGGATCACGGCGCCCCCAGCCCGGCCGGTGGCGGCAGCTTCCCGGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

43.353

100

0.481
  ssb Neisseria gonorrhoeae MS11

43.353

100

0.481
  ssb Vibrio cholerae strain A1552

39.535

100

0.436
  ssb Glaesserella parasuis strain SC1401

36.723

100

0.417